Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3105

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11473 and 11474 are separated by 151 nucleotides mRNA_3105: 11473 - KOG1515 Arylacetamide deacetylase, at 334,494 to 336,059 11473 mRNA_3106: 11474 - BLAST potential peroxisomal matrix Pex8 protein [Pseudo..., at 336,211 to 338,758 11474

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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333,499 - +0.2
333,500 + -0.2
333,501 + +0.3
333,501 + +0.6
333,502 + +0.0
333,514 + +0.2
333,516 - -0.0
333,518 - -2.0
333,519 + -0.6
333,520 + +0.1
333,523 - -1.0
333,523 + -0.3
333,532 - +1.8
333,537 + -0.7
333,554 - +0.2
333,582 + +0.3
333,646 - -1.9
333,648 - +0.1
333,653 + +0.5
333,657 + +0.7
333,657 + +0.3
333,662 + +0.1
333,663 - -0.2
333,663 - +0.4
333,664 - +0.2
333,664 + +0.3
333,665 + -1.7
333,666 - -1.5
333,667 - -0.1
333,674 - +2.0
333,675 - +0.6
333,676 - +0.3
333,676 + -0.6
333,676 + -0.1
333,681 - +0.0
333,705 + +1.4
333,706 - +0.4
333,706 - +0.8
333,706 - -0.1
333,706 - +0.6
333,707 - +1.8
333,708 - +0.7
333,708 - -0.3
333,708 - -1.1
333,718 + -0.6
333,718 - +0.7
333,720 - +1.5
333,729 - -0.5
333,730 - +1.2
333,733 - -1.6
333,735 + -0.6
333,749 + +0.5
333,754 - -0.6
333,767 - -1.5
333,768 + +0.4
333,783 + +0.2
333,788 + -1.0
333,798 + -1.2
333,843 + -0.8
333,889 - +0.5
333,889 - -0.4
333,905 - -0.1
333,905 - -0.3
333,906 + +0.2
333,910 - +0.0
333,914 - +0.3
333,915 + +0.1
333,920 + +0.6
333,923 + +0.9
333,925 - -0.7
333,929 + +1.1
333,968 + -0.7
334,021 + +0.0
334,045 - -0.8
334,073 + -0.4
334,086 - +0.3
334,088 + -1.8
334,089 + -2.4
334,107 + +0.8
334,117 + +1.1
334,195 - +0.1
334,207 - +0.4
334,214 - +0.1
334,214 - +0.3
334,217 - +0.7
334,225 + +0.7
334,227 + -1.0
334,228 + -0.4
334,234 - +0.6
334,246 - -0.9
334,248 - +1.0
334,249 + +0.3
334,253 - +1.6
334,259 + +1.3
334,380 + +0.3
334,392 - -0.2
334,427 + +0.3
334,519 - -0.5
334,521 - +0.1
334,523 - +0.7
334,526 + +1.1
334,552 + +0.8
334,555 + +0.2
334,835 + 11473 mRNA_3105 0.22 -0.1
334,970 + 11473 mRNA_3105 0.30 -0.5
334,970 - 11473 mRNA_3105 0.30 -0.8
334,983 - 11473 mRNA_3105 0.31 -0.5
335,142 - 11473 mRNA_3105 0.41 +0.4
335,163 - 11473 mRNA_3105 0.43 +0.2
335,744 + 11473 mRNA_3105 0.80 +0.4
335,862 - 11473 mRNA_3105 0.87 +0.3
336,033 + +1.3
336,033 - -0.4
336,034 - +0.6
336,036 + -0.0
336,061 - -2.1
336,077 + -0.4
336,140 - +0.9
336,147 - -0.4
336,159 - -0.4
336,161 - +0.2
336,170 - -1.6
336,173 + -0.3
336,175 - +0.8
336,178 + -1.5
336,187 - -0.6
336,190 + +1.1
336,198 + -0.9
336,205 - -1.3
336,205 + +1.6
336,312 - +0.4
336,323 + +0.2
336,327 + +0.2
336,329 + -0.1
336,341 - -0.9
336,345 + +0.0
336,457 - +1.1
336,459 + +1.8
336,481 - 11474 mRNA_3106 0.11 -0.7
336,485 + 11474 mRNA_3106 0.11 -1.2
336,491 - 11474 mRNA_3106 0.11 -1.2
336,634 - 11474 mRNA_3106 0.17 +0.6
336,639 + 11474 mRNA_3106 0.17 -0.4
336,648 - 11474 mRNA_3106 0.17 +1.8
336,649 - 11474 mRNA_3106 0.17 +0.7
336,775 + 11474 mRNA_3106 0.22 +0.1
336,787 - 11474 mRNA_3106 0.23 +2.1
336,935 + 11474 mRNA_3106 0.28 -1.0

Or see this region's nucleotide sequence