Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3152

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11519 and 11520 are separated by 670 nucleotides11520 and 11521 are separated by 230 nucleotides mRNA_3151: 11519 - Hypothetical Protein, at 436,481 to 438,109 11519 mRNA_3152: 11520 - Interpro PET assembly of cytochrome c oxidase, mitochondrial, at 438,780 to 439,151 11520 mRNA_3153: 11521 - BLAST serine proline rich protein [Moniliophthora rorer..., at 439,382 to 440,661 11521

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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437,781 + 11519 mRNA_3151 0.80 -1.9
437,786 - 11519 mRNA_3151 0.80 +0.4
437,793 + 11519 mRNA_3151 0.81 +0.4
437,803 - 11519 mRNA_3151 0.81 -0.4
437,811 + 11519 mRNA_3151 0.82 +0.4
437,818 - 11519 mRNA_3151 0.82 +0.4
437,818 - 11519 mRNA_3151 0.82 -0.2
437,819 + 11519 mRNA_3151 0.82 +0.8
437,820 - 11519 mRNA_3151 0.82 +0.5
437,825 - 11519 mRNA_3151 0.83 +0.2
437,826 - 11519 mRNA_3151 0.83 +2.1
437,828 - 11519 mRNA_3151 0.83 +0.4
437,828 - 11519 mRNA_3151 0.83 -3.3
437,830 - 11519 mRNA_3151 0.83 +0.2
437,832 + 11519 mRNA_3151 0.83 -0.6
437,833 - 11519 mRNA_3151 0.83 +0.7
437,835 - 11519 mRNA_3151 0.83 +0.4
437,836 - 11519 mRNA_3151 0.83 +0.0
437,836 + 11519 mRNA_3151 0.83 +0.4
437,836 + 11519 mRNA_3151 0.83 +2.3
437,839 - 11519 mRNA_3151 0.83 +0.9
437,840 - 11519 mRNA_3151 0.83 +1.2
437,840 - 11519 mRNA_3151 0.83 +0.2
437,842 - 11519 mRNA_3151 0.84 -1.1
437,843 + 11519 mRNA_3151 0.84 -2.8
437,844 - 11519 mRNA_3151 0.84 -1.0
437,845 + 11519 mRNA_3151 0.84 -0.5
437,846 - 11519 mRNA_3151 0.84 +0.1
437,847 + 11519 mRNA_3151 0.84 +0.6
437,847 + 11519 mRNA_3151 0.84 +0.4
437,847 + 11519 mRNA_3151 0.84 -1.7
437,847 + 11519 mRNA_3151 0.84 +0.3
437,848 + 11519 mRNA_3151 0.84 -0.2
437,850 - 11519 mRNA_3151 0.84 +0.2
437,850 + 11519 mRNA_3151 0.84 +0.0
437,851 + 11519 mRNA_3151 0.84 +1.9
437,851 + 11519 mRNA_3151 0.84 +0.3
437,852 + 11519 mRNA_3151 0.84 -0.4
437,853 + 11519 mRNA_3151 0.84 +0.1
437,853 + 11519 mRNA_3151 0.84 -0.2
437,853 - 11519 mRNA_3151 0.84 -0.7
437,854 - 11519 mRNA_3151 0.84 +0.7
437,855 + 11519 mRNA_3151 0.84 +0.0
437,855 + 11519 mRNA_3151 0.84 -0.0
437,856 + 11519 mRNA_3151 0.84 +0.6
437,857 + 11519 mRNA_3151 0.84 +1.9
437,862 - 11519 mRNA_3151 0.85 +0.6
437,866 + 11519 mRNA_3151 0.85 +1.7
437,867 + 11519 mRNA_3151 0.85 -3.3
437,867 + 11519 mRNA_3151 0.85 -0.4
437,868 - 11519 mRNA_3151 0.85 -0.1
437,870 + 11519 mRNA_3151 0.85 +0.8
437,870 - 11519 mRNA_3151 0.85 +0.3
437,870 + 11519 mRNA_3151 0.85 -0.4
437,872 + 11519 mRNA_3151 0.85 -0.1
437,873 - 11519 mRNA_3151 0.85 -0.4
437,873 + 11519 mRNA_3151 0.85 +0.8
437,874 + 11519 mRNA_3151 0.86 +0.6
437,874 + 11519 mRNA_3151 0.86 -0.1
437,884 + 11519 mRNA_3151 0.86 +0.0
437,897 + 11519 mRNA_3151 0.87 -0.4
437,905 - 11519 mRNA_3151 0.87 +0.0
437,914 - 11519 mRNA_3151 0.88 +0.6
437,920 + 11519 mRNA_3151 0.88 +0.5
437,924 - 11519 mRNA_3151 0.89 -0.7
437,927 - 11519 mRNA_3151 0.89 -0.6
437,927 + 11519 mRNA_3151 0.89 +0.8
437,936 + 11519 mRNA_3151 0.89 -0.1
437,936 - 11519 mRNA_3151 0.89 -0.1
437,940 + 11519 mRNA_3151 0.90 -1.0
437,951 - -1.7
437,958 + -0.7
437,996 + -2.2
438,035 - -0.5
438,041 - +1.3
438,047 - +0.0
438,050 + +1.5
438,051 - -1.0
438,053 + +0.4
438,058 - -0.7
438,058 - -0.3
438,059 - +0.2
438,061 - +2.9
438,061 + +0.8
438,061 + +0.3
438,062 + -1.0
438,064 + -0.4
438,066 - -1.2
438,067 - +0.2
438,067 - -0.3
438,069 - -0.2
438,070 - -0.7
438,070 + +0.7
438,070 - -0.3
438,072 - -1.0
438,076 + +0.2
438,077 + -1.6
438,077 + +0.1
438,080 - -3.0
438,080 + +0.1
438,082 - +0.3
438,083 + +0.5
438,085 + -0.7
438,089 - -0.2
438,089 + +1.3
438,090 - +1.1
438,091 - +1.6
438,094 + +0.2
438,098 + +0.6
438,106 + +0.1
438,107 + -0.9
438,112 + +0.2
438,112 + -0.5
438,124 + -1.1
438,131 - -0.3
438,142 - +0.0
438,148 - +0.6
438,150 - +0.6
438,161 + -0.1
438,168 - +0.4
438,180 - -0.3
438,180 + -2.5
438,181 + +2.7
438,193 + -0.7
438,195 - +0.9
438,208 - -0.2
438,208 + -0.6
438,227 + -0.1
438,231 - +1.3
438,233 - -1.4
438,234 - +0.3
438,236 + +1.0
438,237 - -0.4
438,239 + -3.5
438,242 + -0.2
438,242 + -2.2
438,252 - +1.2
438,253 - +1.7
438,257 - -1.1
438,257 - +0.4
438,259 + +0.2
438,259 + -1.4
438,263 - -0.9
438,264 + +1.2
438,266 - +0.7
438,282 + -1.0
438,283 - -0.8
438,287 - -0.8
438,294 - +0.7
438,303 - +1.7
438,306 + +0.5
438,316 - +2.4
438,319 + +2.8
438,320 - +0.7
438,326 + -0.1
438,330 - +0.5
438,341 + -0.4
438,344 - +0.8
438,346 - -0.2
438,347 - -1.0
438,361 - +0.2
438,368 + +0.2
438,380 - -1.4
438,414 - +0.7
438,426 - -0.5
438,436 - -1.2
438,446 + +0.1
438,469 - +1.4
438,471 - -1.6
438,472 + -0.4
438,478 - -2.2
438,503 + +0.5
438,542 - +0.9
438,552 + +0.6
438,560 - +0.8
438,603 - -1.3
438,612 - +0.7
438,614 - -0.9
438,629 + +0.8
438,643 + -2.1
438,645 + -0.3
438,655 - -0.5
438,662 - -0.2
438,778 - +0.4
438,784 + -0.4
438,844 - 11520 mRNA_3152 0.17 -3.7
438,898 + 11520 mRNA_3152 0.32 +0.2
438,920 + 11520 mRNA_3152 0.38 +0.8
438,952 - 11520 mRNA_3152 0.46 +0.2
439,046 - 11520 mRNA_3152 0.72 -1.6
439,067 - 11520 mRNA_3152 0.77 -0.5
439,080 + 11520 mRNA_3152 0.81 -0.0
439,089 + 11520 mRNA_3152 0.83 +0.4
439,199 - +1.2
439,200 + +1.5
439,201 - +2.1
439,202 + +0.5
439,203 - -0.8
439,203 + -1.0
439,204 + -1.6
439,344 - +0.2
439,350 + +0.3
439,485 + +0.0
439,645 + 11521 mRNA_3153 0.21 -0.4
439,674 + 11521 mRNA_3153 0.23 +0.8
439,785 - 11521 mRNA_3153 0.31 -0.0
439,787 + 11521 mRNA_3153 0.32 -0.1
439,792 - 11521 mRNA_3153 0.32 +1.6
440,096 + 11521 mRNA_3153 0.56 +0.1

Or see this region's nucleotide sequence