Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3169

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11537 and 11538 are separated by 647 nucleotides mRNA_3169: 11537 - Hypothetical Protein, at 529 to 1,526 11537 mRNA_3170: 11538 - Hypothetical Protein, at 2,174 to 3,237 11538

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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12 + +0.3
12 + -0.5
15 + +2.2
16 + +0.2
18 + -1.5
22 + -2.0
25 + +0.5
57 - +1.7
61 - +0.1
62 + -2.8
62 + +1.2
66 + -1.0
72 + -1.5
72 + -0.6
72 + -0.9
75 + +0.4
78 - -0.4
105 + -1.7
110 - -0.5
114 + +0.4
115 + -0.8
118 + +1.0
122 + -0.1
122 - -0.6
124 + +0.2
135 + +0.9
147 + +0.9
157 + -0.0
161 + -0.4
168 + +0.5
174 + -0.2
177 - -0.0
228 + +1.4
247 + +0.3
252 - -1.2
253 - +1.6
255 + +0.5
258 + -1.0
264 - -0.3
269 + +0.3
269 - +0.2
274 + +1.0
275 - +1.4
277 + -0.3
280 + +2.7
280 + -1.1
283 - +0.5
285 - +1.6
287 + -1.0
287 + +0.1
288 + +0.1
292 - -0.4
293 + -0.2
298 + -1.9
305 - +0.5
314 + -0.5
320 + -0.1
368 + -0.5
370 - -0.3
372 + -0.3
382 + +0.5
384 + -0.5
391 + +0.2
391 - -1.7
397 + +1.2
397 - -2.4
402 + +0.4
405 + +0.9
423 - -3.0
430 + -0.1
440 + -0.6
446 + -0.8
470 + -1.0
524 + +0.1
532 + +0.9
545 - +0.5
557 + -1.5
569 + -0.2
570 - +0.1
583 + +0.0
584 + +1.3
603 - +0.0
603 + +1.0
634 - 11537 mRNA_3169 0.11 +0.5
636 + 11537 mRNA_3169 0.11 -0.6
646 + 11537 mRNA_3169 0.12 +0.8
661 + 11537 mRNA_3169 0.13 +0.4
667 + 11537 mRNA_3169 0.14 -0.1
698 + 11537 mRNA_3169 0.17 -0.7
704 - 11537 mRNA_3169 0.18 +0.7
705 - 11537 mRNA_3169 0.18 +0.8
721 - 11537 mRNA_3169 0.19 -0.1
725 + 11537 mRNA_3169 0.20 -0.2
738 - 11537 mRNA_3169 0.21 -0.1
849 + 11537 mRNA_3169 0.32 +1.7
871 + 11537 mRNA_3169 0.34 -0.2
883 + 11537 mRNA_3169 0.35 -0.3
894 + 11537 mRNA_3169 0.37 -0.1
895 + 11537 mRNA_3169 0.37 +0.4
922 + 11537 mRNA_3169 0.39 -0.2
965 - 11537 mRNA_3169 0.44 -2.1
1,012 - 11537 mRNA_3169 0.48 +1.9
1,026 + 11537 mRNA_3169 0.50 -0.9
1,026 + 11537 mRNA_3169 0.50 -1.2
1,105 + 11537 mRNA_3169 0.58 -0.8
1,123 + 11537 mRNA_3169 0.60 -1.3
1,141 + 11537 mRNA_3169 0.61 +3.1
1,142 + 11537 mRNA_3169 0.61 +1.0
1,165 + 11537 mRNA_3169 0.64 +0.8
1,174 - 11537 mRNA_3169 0.65 +0.1
1,174 + 11537 mRNA_3169 0.65 -0.3
1,259 + 11537 mRNA_3169 0.73 -0.1
1,265 + 11537 mRNA_3169 0.74 +0.6
1,268 + 11537 mRNA_3169 0.74 -0.4
1,269 - 11537 mRNA_3169 0.74 +0.5
1,288 - 11537 mRNA_3169 0.76 -0.2
1,297 + 11537 mRNA_3169 0.77 +0.1
1,303 - 11537 mRNA_3169 0.78 -0.0
1,399 + 11537 mRNA_3169 0.87 -0.1
1,412 - 11537 mRNA_3169 0.88 -1.1
1,419 - 11537 mRNA_3169 0.89 +0.2
1,423 - 11537 mRNA_3169 0.90 -3.5
1,429 - -0.4
1,453 + +0.7
1,459 + -0.3
1,459 + +0.5
1,460 - +0.2
1,461 + +0.5
1,462 + +1.4
1,467 + +0.6
1,470 - -1.2
1,474 - +0.6
1,485 + -1.0
1,520 + -0.1
1,523 + +0.6
1,531 - -0.9
1,537 + -0.2
1,541 + -0.6
1,562 + -0.1
1,567 + +0.1
1,572 + +0.5
1,582 - -0.0
1,584 - +1.9
1,589 + -0.7
1,596 - +0.5
1,601 - -0.5
1,602 + -0.0
1,605 + +1.3
1,609 + +0.7
1,616 + -0.8
1,636 + +1.2
1,654 + +1.9
1,656 - +0.2
1,666 + -1.5
1,675 - +0.2
1,682 - -0.0
1,697 - +0.3
1,709 + -0.2
1,709 - -0.2
1,711 + -1.3
1,718 - -1.2
1,719 + +0.0
1,722 - +0.1
1,723 + -0.0
1,725 - -0.6
1,725 - +0.6
1,727 + +0.3
1,730 + -0.8
1,731 + -2.2
1,732 + -1.2
1,732 + +0.0
1,734 + -0.1
1,734 + -0.6
1,734 + +0.6
1,739 - +0.6
1,740 + -0.5
1,744 - +0.8
1,747 + -0.3
1,749 + -1.2
1,759 + +0.2
1,759 + -0.7
1,759 + +0.8
1,761 + +0.2
1,763 + -1.5
1,765 + +1.6
1,767 + -0.8
1,769 + +0.6
1,772 + +0.3
1,772 + -1.1
1,774 + +0.5
1,774 + +0.1
1,775 + -0.4
1,776 - -0.4
1,776 + -1.2
1,777 + -0.2
1,778 + +0.5
1,778 - +1.1
1,781 - +2.1
1,783 - +0.2
1,783 - -0.9
1,783 - -0.9
1,783 - +1.4
1,784 + +2.3
1,789 + +0.0
1,789 - +0.6
1,791 + +1.6
1,792 + +1.8
1,793 + -1.2
1,795 + +0.0
1,796 + -1.6
1,796 - -2.3
1,798 + +0.1
1,800 + +0.0
1,801 + -0.1
1,805 + -0.2
1,805 + -1.7
1,807 + -0.1
1,813 - -0.4
1,814 + +0.2
1,814 + -0.4
1,818 - +1.2
1,851 - -0.1
1,874 + -1.1
1,881 - -0.3
1,885 - +0.3
1,891 - +0.8
1,896 - +0.1
1,912 + -0.5
1,912 + -0.0
1,914 - +0.1
1,916 - -1.0
1,917 - -1.1
1,919 + +0.8
1,922 - +1.2
1,923 - -0.7
1,934 - -2.0
1,935 + -0.1
1,938 - -0.1
1,938 - +0.3
1,940 - +0.2
1,941 + +0.9
1,941 + -0.8
1,942 + +1.4
1,943 - -0.2
1,944 + +0.2
1,944 - -0.0
1,945 - +1.1
1,945 + +0.4
1,946 - -0.3
1,947 + +0.3
1,960 - -0.1
1,968 + -0.7
1,980 + -2.2
2,015 + +0.1
2,067 - +1.6
2,081 - +0.2
2,091 + +0.3
2,220 + +0.5
2,229 - -1.0
2,235 - +0.0
2,237 - -1.5
2,242 + -0.5
2,242 - -0.1
2,245 - +0.8
2,248 - +1.7
2,251 + -0.7
2,254 - +0.3
2,261 + +0.5
2,262 - -1.5
2,266 + -0.9
2,268 + +0.9
2,400 + 11538 mRNA_3170 0.21 -0.8
2,401 - 11538 mRNA_3170 0.21 +0.8
2,404 + 11538 mRNA_3170 0.22 -0.1
2,414 + 11538 mRNA_3170 0.23 -1.2
2,420 - 11538 mRNA_3170 0.23 -0.4
2,439 + 11538 mRNA_3170 0.25 +0.5
2,446 + 11538 mRNA_3170 0.26 -1.6
2,470 - 11538 mRNA_3170 0.28 -2.1
2,516 - 11538 mRNA_3170 0.32 -0.6

Or see this region's nucleotide sequence