Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3259

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11626 and 11627 are separated by 143 nucleotides11627 and 11628 are separated by 195 nucleotides mRNA_3258: 11626 - K00791 miaA, TRIT1 tRNA dimethylallyltransferase, at 232,790 to 234,851 11626 mRNA_3259: 11627 - Hypothetical Protein, at 234,995 to 236,136 11627 mRNA_3260: 11628 - HMMPfam-Eukaryotic mitochondrial regulator protein-PF12298, at 236,332 to 237,668 11628

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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234,361 + 11626 mRNA_3258 0.76 +0.0
234,606 - 11626 mRNA_3258 0.88 +0.3
234,931 - -0.3
234,936 - -1.7
234,936 - +0.6
234,938 - +0.8
234,943 + +1.2
234,948 + +1.3
234,967 + +0.4
235,098 - +0.7
235,218 - 11627 mRNA_3259 0.20 -1.7
235,362 - 11627 mRNA_3259 0.32 +0.5
235,407 + 11627 mRNA_3259 0.36 +1.9
235,839 + 11627 mRNA_3259 0.74 -0.2
235,935 + 11627 mRNA_3259 0.82 -1.3
236,152 + -0.5
236,271 - +0.5

Or see this region's nucleotide sequence