Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3391

Experiment: Sorted No BODIPY Gate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11758 and 11759 are separated by 679 nucleotides11759 and 11760 are separated by 347 nucleotides mRNA_3390: 11758 - K06617 E2.4.1.82 raffinose synthase, at 564,328 to 568,075 11758 mRNA_3391: 11759 - Hypothetical Protein, at 568,755 to 569,736 11759 mRNA_3392: 11760 - HMMPfam-Caffeine-induced death protein 2-PF09774, at 570,084 to 570,935 11760

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
remove
567,992 + -0.5
568,107 + +0.1
568,123 - -0.4
568,129 - -0.3
568,134 - -1.2
568,145 - -1.4
568,150 + +1.1
568,169 + +0.4
568,171 + +0.1
568,185 - +0.5
568,306 + -2.6
568,453 - -0.6
568,903 + 11759 mRNA_3391 0.15 +0.5
569,054 - 11759 mRNA_3391 0.30 -0.1
569,180 + 11759 mRNA_3391 0.43 +0.6
569,370 + 11759 mRNA_3391 0.63 -0.5
569,477 + 11759 mRNA_3391 0.74 -0.2
569,477 - 11759 mRNA_3391 0.74 +1.8
569,618 + 11759 mRNA_3391 0.88 +0.9
569,639 - -0.1
569,780 - +0.7
569,781 + +1.1
569,791 + +0.5
569,795 - +0.1
569,799 - -0.3
569,803 + +0.0
569,814 - -1.2
569,860 - +0.5
569,864 + +1.1
569,877 + -0.5
569,987 - +0.9
570,007 - +0.8
570,108 - -0.5
570,281 - 11760 mRNA_3392 0.23 +0.6
570,566 - 11760 mRNA_3392 0.57 +0.4

Or see this region's nucleotide sequence