Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3404

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11771 and 11772 are separated by 694 nucleotides11772 and 11773 are separated by 88 nucleotides mRNA_3403: 11771 - BLAST Myc-type, basic helix-loop-helix (bHLH) domain [Xanth..., at 4,224 to 7,427 11771 mRNA_3404: 11772 - K13171 SRRM1, SRM160 serine/arginine repetitive matrix protein 1, at 8,122 to 9,979 11772 mRNA_3405: 11773 - K17922 SNX8, MVP1 sorting nexin-8, at 10,068 to 11,831 11773

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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10,617 + 11773 mRNA_3405 0.31 -0.6
10,659 + 11773 mRNA_3405 0.34 -0.2

Or see this region's nucleotide sequence