Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3413

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11780 and 11781 are separated by 341 nucleotides11781 and 11782 are separated by 490 nucleotides mRNA_3412: 11780 - KOG0548 Molecular co-chaperone STI1, at 32,248 to 34,426 11780 mRNA_3413: 11781 - K00622 nat arylamine N-acetyltransferase, at 34,768 to 35,867 11781 mRNA_3414: 11782 - Hypothetical Protein, at 36,358 to 36,969 11782

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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34,439 + +0.9
34,439 + +0.6
34,456 - +0.5
34,577 - -1.5
34,589 + +0.5
34,596 + -1.2
34,733 - -0.1
34,737 + +2.1
34,747 - +1.2
34,862 + +0.2
34,873 + -1.2
34,879 + 11781 mRNA_3413 0.10 +0.0
34,893 + 11781 mRNA_3413 0.11 -1.4
34,895 - 11781 mRNA_3413 0.12 +1.0
34,903 + 11781 mRNA_3413 0.12 +0.1
35,019 - 11781 mRNA_3413 0.23 +0.2
35,184 - 11781 mRNA_3413 0.38 +1.5
35,303 - 11781 mRNA_3413 0.49 -1.4
36,435 + 11782 mRNA_3414 0.13 -1.5
36,805 + 11782 mRNA_3414 0.73 +0.8

Or see this region's nucleotide sequence