Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3418

Experiment: Sorted No BODIPY Gate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11785 and 11786 are separated by 470 nucleotides mRNA_3417: 11785 - Hypothetical Protein, at 43,744 to 46,912 11785 mRNA_3418: 11786 - KOG1502 Flavonol reductase/cinnamoyl-CoA reductase, at 47,383 to 48,909 11786

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
remove
46,545 - 11785 mRNA_3417 0.88 -0.1
46,554 - 11785 mRNA_3417 0.89 -1.0
46,560 + 11785 mRNA_3417 0.89 -0.2
46,679 - +0.2
46,689 - -0.4
46,695 - -0.3
46,983 - -0.2
46,989 - +0.1
46,998 + +1.6
47,100 + +0.5
47,112 + -1.0
47,138 - -0.9
47,157 - -0.7
47,157 + -0.5
47,159 + -0.1
47,161 + -1.1
47,267 - +0.3
47,270 + +1.9
47,277 + -1.6
47,299 + +0.2
47,301 + -0.1
47,308 - -0.0
47,308 - +0.4
47,312 + -0.0
47,445 + +1.4
48,325 - 11786 mRNA_3418 0.62 -0.2
48,584 + 11786 mRNA_3418 0.79 +0.2
48,910 + +0.2
49,097 - -0.2
49,103 + +0.4
49,180 + +1.2
49,194 - +0.5
49,195 + +0.5
49,214 + -0.9
49,325 - -0.9
49,349 - -1.4
49,371 + +0.4
49,372 + +0.8
49,376 - -0.5
49,376 - +0.5
49,378 - +0.5
49,378 - -1.0
49,379 - +0.2
49,384 + +0.9
49,387 + -0.1
49,393 - +0.1
49,396 - +0.4
49,398 + +0.3
49,400 + -0.4
49,402 + -1.4
49,406 + +0.6
49,407 + +0.7
49,409 + -0.3
49,409 + -0.3
49,420 - +0.2
49,472 - +0.1
49,496 - -0.2
49,503 - +0.1
49,505 + +0.6
49,505 + +0.5
49,508 - -0.5
49,524 + +0.8
49,527 + -0.0
49,532 - -0.4
49,534 - -0.4
49,574 + +0.9
49,582 + +1.3
49,605 + +0.1
49,610 + -0.7
49,626 - +1.5
49,626 - -0.4
49,627 - -0.0
49,627 - +0.1
49,629 + +1.2
49,638 - +0.3
49,644 + +0.6
49,663 + +0.2
49,736 - -0.4
49,754 - +1.5
49,766 - +0.6
49,776 + +0.3
49,777 - +0.3
49,784 - +0.2
49,803 - +1.0

Or see this region's nucleotide sequence