Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3423

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11790 and 11791 are separated by 450 nucleotides11791 and 11792 are separated by 469 nucleotides mRNA_3422: 11790 - KOG2882 p-Nitrophenyl phosphatase, at 61,810 to 63,146 11790 mRNA_3423: 11791 - KOG3655 Drebrins and related actin binding proteins, at 63,597 to 64,502 11791 mRNA_3424: 11792 - Hypothetical Protein, at 64,972 to 67,736 11792

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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63,005 - 11790 mRNA_3422 0.89 -1.5
63,137 + +1.4
63,138 - +0.6
63,157 + +0.1
63,158 - +0.8
63,168 + +2.8
63,168 + -3.0
63,304 + +0.3
63,306 - +0.6
63,616 - +0.4
63,620 + +0.0
63,760 - 11791 mRNA_3423 0.18 +0.0
64,023 - 11791 mRNA_3423 0.47 -2.0
64,032 - 11791 mRNA_3423 0.48 -0.0
64,082 + 11791 mRNA_3423 0.54 -0.7
64,167 - 11791 mRNA_3423 0.63 -1.4
65,097 - +1.1
65,234 - +0.3
65,361 + 11792 mRNA_3424 0.14 -0.4
65,386 - 11792 mRNA_3424 0.15 -1.1

Or see this region's nucleotide sequence