Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3464

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11831 and 11832 are separated by 378 nucleotides11832 and 11833 are separated by 196 nucleotides mRNA_3463: 11831 - Hypothetical Protein, at 163,497 to 164,279 11831 mRNA_3464: 11832 - K02684 PRI1 DNA primase small subunit, at 164,658 to 166,622 11832 mRNA_3465: 11833 - KOG1176 Acyl-CoA synthetase, at 166,819 to 169,091 11833

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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163,714 - 11831 mRNA_3463 0.28 +0.1
163,725 - 11831 mRNA_3463 0.29 +0.3
163,864 - 11831 mRNA_3463 0.47 +0.2
163,896 - 11831 mRNA_3463 0.51 -0.1
163,997 - 11831 mRNA_3463 0.64 -1.0
164,036 + 11831 mRNA_3463 0.69 +0.8
164,099 - 11831 mRNA_3463 0.77 +0.1
164,118 + 11831 mRNA_3463 0.79 +0.8
164,157 - 11831 mRNA_3463 0.84 +1.0
164,310 - +0.2
164,327 + -0.5
164,429 + +0.2
164,569 + -0.1
164,571 + -1.6
164,576 + +0.6
164,577 - -0.3
164,619 + +1.1
166,680 + -0.9
166,777 - -0.7
166,965 - +0.2

Or see this region's nucleotide sequence