Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3507

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11874 and 11875 are separated by 214 nucleotides11875 and 11876 are separated by 198 nucleotides mRNA_3506: 11874 - HMMPfam-Asp/Glu/Hydantoin racemase-PF01177, at 259,634 to 260,419 11874 mRNA_3507: 11875 - K12251 aguB N-carbamoylputrescine amidase, at 260,634 to 261,961 11875 mRNA_3508: 11876 - K00273 DAO, aao D-amino-acid oxidase, at 262,160 to 263,731 11876

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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259,893 - 11874 mRNA_3506 0.33 +0.4
260,009 + 11874 mRNA_3506 0.48 +0.9
260,042 - 11874 mRNA_3506 0.52 -1.5
260,062 + 11874 mRNA_3506 0.54 +0.8
260,487 + -0.7
260,492 - +1.6
260,500 - -0.7
260,911 - 11875 mRNA_3507 0.21 +0.2
260,923 - 11875 mRNA_3507 0.22 -0.1
261,047 + 11875 mRNA_3507 0.31 -0.2
261,060 + 11875 mRNA_3507 0.32 +0.4
261,223 + 11875 mRNA_3507 0.44 +0.2
261,476 + 11875 mRNA_3507 0.63 -0.3
261,525 - 11875 mRNA_3507 0.67 +0.1
261,664 + 11875 mRNA_3507 0.78 +0.2
262,069 - +0.4
262,210 - -0.0
262,247 + +0.4
262,366 - 11876 mRNA_3508 0.13 +0.9
262,526 - 11876 mRNA_3508 0.23 +1.2
262,529 + 11876 mRNA_3508 0.23 -1.0
262,544 + 11876 mRNA_3508 0.24 +2.1
262,676 + 11876 mRNA_3508 0.33 -1.3

Or see this region's nucleotide sequence