Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3537

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt mRNA_3537: 11905 - Hypothetical Protein, at 102 to 917 11905

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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2 + +0.7
2 + +0.7
2 + +0.4
2 + -0.3
2 + -0.7
2 + +0.1
2 + -0.1
14 + +0.2
26 + +0.3
36 + -0.8
39 + +0.6
42 - +0.5
50 + -0.9
50 + +0.2
50 + +0.5
53 - +0.2
57 + -0.1
59 - -0.1
103 + +1.6
104 + -1.2
112 + +0.8
117 - +0.8
120 - +2.2
140 - -0.6
141 + -1.0
146 + +0.1
150 + -1.0
199 - 11905 mRNA_3537 0.12 -0.8
200 + 11905 mRNA_3537 0.12 +0.2
200 - 11905 mRNA_3537 0.12 -0.2
200 - 11905 mRNA_3537 0.12 -1.2
200 - 11905 mRNA_3537 0.12 -1.7
201 - 11905 mRNA_3537 0.12 -0.2
207 + 11905 mRNA_3537 0.13 -0.6
207 + 11905 mRNA_3537 0.13 -2.1
207 + 11905 mRNA_3537 0.13 -2.5
209 + 11905 mRNA_3537 0.13 +0.6
210 + 11905 mRNA_3537 0.13 -0.4
213 + 11905 mRNA_3537 0.14 +0.3
213 + 11905 mRNA_3537 0.14 +0.7
214 + 11905 mRNA_3537 0.14 -0.5
214 + 11905 mRNA_3537 0.14 +0.2
218 + 11905 mRNA_3537 0.14 +0.6
221 + 11905 mRNA_3537 0.15 +1.0
222 + 11905 mRNA_3537 0.15 +0.7
222 + 11905 mRNA_3537 0.15 -0.0
222 + 11905 mRNA_3537 0.15 +2.8
223 - 11905 mRNA_3537 0.15 +0.9
225 - 11905 mRNA_3537 0.15 +0.0
227 - 11905 mRNA_3537 0.15 -0.3
227 + 11905 mRNA_3537 0.15 -0.9
230 + 11905 mRNA_3537 0.16 -0.7
230 + 11905 mRNA_3537 0.16 -0.6
246 - 11905 mRNA_3537 0.18 +0.3
246 - 11905 mRNA_3537 0.18 -1.5
251 + 11905 mRNA_3537 0.18 -0.4
252 + 11905 mRNA_3537 0.18 -0.2
260 + 11905 mRNA_3537 0.19 -0.6
262 + 11905 mRNA_3537 0.20 -3.5
265 - 11905 mRNA_3537 0.20 -0.1
272 - 11905 mRNA_3537 0.21 -0.4
274 + 11905 mRNA_3537 0.21 +1.8
325 - 11905 mRNA_3537 0.27 +0.1
326 - 11905 mRNA_3537 0.27 +1.1
341 + 11905 mRNA_3537 0.29 -0.3
359 + 11905 mRNA_3537 0.31 -0.2
362 + 11905 mRNA_3537 0.32 -0.6
367 - 11905 mRNA_3537 0.32 -1.1
368 + 11905 mRNA_3537 0.33 -0.1
368 + 11905 mRNA_3537 0.33 +1.1
368 + 11905 mRNA_3537 0.33 +0.9
373 + 11905 mRNA_3537 0.33 +2.8
373 - 11905 mRNA_3537 0.33 -0.4
373 - 11905 mRNA_3537 0.33 +0.3
379 + 11905 mRNA_3537 0.34 +0.1
380 + 11905 mRNA_3537 0.34 +0.1
417 + 11905 mRNA_3537 0.39 -0.1
452 + 11905 mRNA_3537 0.43 -0.1
472 + 11905 mRNA_3537 0.45 -1.3
484 + 11905 mRNA_3537 0.47 +0.5
489 - 11905 mRNA_3537 0.47 +0.6
503 - 11905 mRNA_3537 0.49 -0.0
511 + 11905 mRNA_3537 0.50 -1.1
518 + 11905 mRNA_3537 0.51 +1.5
523 + 11905 mRNA_3537 0.52 -0.6
533 + 11905 mRNA_3537 0.53 +0.4
539 + 11905 mRNA_3537 0.54 -0.2
550 + 11905 mRNA_3537 0.55 +0.2
579 + 11905 mRNA_3537 0.58 -1.1
638 - 11905 mRNA_3537 0.66 +0.1
640 - 11905 mRNA_3537 0.66 -0.6
657 + 11905 mRNA_3537 0.68 -1.3
762 - 11905 mRNA_3537 0.81 -0.0
768 + 11905 mRNA_3537 0.82 +0.0
791 - 11905 mRNA_3537 0.84 +1.0
801 + 11905 mRNA_3537 0.86 -0.2
804 + 11905 mRNA_3537 0.86 +0.8
822 + 11905 mRNA_3537 0.88 +0.5
827 + 11905 mRNA_3537 0.89 +0.3
842 + -0.6
842 + +0.1
845 - -0.3
962 - +1.4
990 + +0.4
1,074 + +1.7
1,080 - -0.5
1,107 + -1.2
1,110 - +1.0
1,123 + +0.0
1,143 + -0.5
1,256 - +0.3
1,278 + +0.9
1,336 + +0.2
1,371 - -0.0
1,404 - -0.9
1,429 + +1.8
1,450 + -0.3
1,528 + +0.6
1,550 + -0.1
1,647 - -0.1
1,653 + +0.3
1,661 - +0.2
1,663 + -0.1
1,719 + -1.0
1,720 + -0.5
1,760 + -1.1
1,814 - -0.2
1,902 - -0.5

Or see this region's nucleotide sequence