Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3601

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11968 and 11969 are separated by 927 nucleotides11969 and 11970 are separated by 505 nucleotides mRNA_3600: 11968 - HMMPfam-PWWP domain-PF00855,ProSiteProfiles-PWWP domain profile.-PS50812,SMART-domain with conserved PWWP motif-SM00293,SUPERFAMILY--SSF63748, at 140,474 to 142,309 11968 mRNA_3601: 11969 - K11367 CHD1 chromodomain-helicase-DNA-binding protein 1, at 143,237 to 148,837 11969 mRNA_3602: 11970 - K10839 RAD23, HR23 UV excision repair protein RAD23, at 149,343 to 150,921 11970

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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142,602 - -0.0
142,772 - +0.2
142,793 + +0.5
142,861 - +0.5
142,915 + +0.0
142,916 - -0.7
142,923 + +0.4
142,932 - -0.5
142,955 - -0.1
142,958 - +0.8
143,046 - -0.0
143,076 + -0.9
143,098 - +1.0
143,255 - -1.4
143,416 + +0.1
143,418 + -0.3
144,125 - 11969 mRNA_3601 0.16 +0.3
148,704 - -0.0
148,707 + +0.5
148,850 - +0.2
148,854 - +0.0
148,986 + -0.2
149,011 - +0.5
149,019 + +1.0
149,105 + +0.3
149,127 - -0.1
149,275 + -2.0
149,289 - -2.1
149,297 - +0.8
149,609 - 11970 mRNA_3602 0.17 -0.5

Or see this region's nucleotide sequence