Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3685

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12052 and 12053 are separated by 365 nucleotides12053 and 12054 are separated by 146 nucleotides mRNA_3684: 12052 - K05955 FNTA protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha, at 343,363 to 344,847 12052 mRNA_3685: 12053 - KOG4212 RNA-binding protein hnRNP-M, at 345,213 to 348,082 12053 mRNA_3686: 12054 - SUPERFAMILY--SSF54695, at 348,229 to 349,499 12054

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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344,849 - +1.4
344,859 - +1.1
344,865 + +1.3
344,867 - -0.1
344,869 - -0.6
344,875 + +1.2
344,889 - +0.5
344,892 + +0.3
345,005 - +1.1
345,028 - -0.4
345,028 - +1.8
345,032 - -1.4
345,047 + +0.7
345,051 + +1.2
345,165 - +0.3
345,170 - +0.4
345,188 - -0.4
345,195 + +0.3
345,195 + -0.2
345,432 + -2.3
345,539 - 12053 mRNA_3685 0.11 -3.0
345,594 + 12053 mRNA_3685 0.13 -0.8
345,642 + 12053 mRNA_3685 0.15 -0.1
345,746 - 12053 mRNA_3685 0.19 -1.1
345,760 + 12053 mRNA_3685 0.19 -1.8
347,911 + -2.7
347,957 - -1.9
348,079 + -1.0
348,230 + +0.4
348,371 - 12054 mRNA_3686 0.11 +1.4
348,395 - 12054 mRNA_3686 0.13 +0.2
348,814 - 12054 mRNA_3686 0.46 -0.5
348,832 + 12054 mRNA_3686 0.47 +2.2

Or see this region's nucleotide sequence