Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3690

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12057 and 12058 are separated by 498 nucleotides mRNA_3689: 12057 - Hypothetical Protein, at 354,043 to 355,679 12057 mRNA_3690: 12058 - BLAST Ser/Thr protein kinase [Mucor ambiguus], at 356,178 to 360,570 12058

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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355,647 + +0.7
355,823 + -0.5
356,086 + -2.2
356,111 - +0.9
356,547 + -0.4
357,398 - 12058 mRNA_3690 0.28 -0.5
357,435 - 12058 mRNA_3690 0.29 +1.1
358,450 - 12058 mRNA_3690 0.52 +0.3
359,766 - 12058 mRNA_3690 0.82 -0.1
359,893 - 12058 mRNA_3690 0.85 -0.3
359,927 - 12058 mRNA_3690 0.85 +0.3
360,372 + +0.3
360,770 - +0.4
360,793 - -0.0
360,804 - -1.3
361,091 - -1.7
361,118 + -0.3
361,123 + -0.3
361,124 + +0.1

Or see this region's nucleotide sequence