Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3725

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12092 and 12093 are separated by 416 nucleotides12093 and 12094 are separated by 80 nucleotides mRNA_3724: 12092 - KOG1744 Histone H2B, at 437,180 to 437,338 12092 mRNA_3725: 12093 - K18168 SDHAF2, SDH5 succinate dehydrogenase assembly factor 2, at 437,755 to 438,417 12093 mRNA_3726: 12094 - K04082 hscB, HSCB, HSC20 molecular chaperone HscB, at 438,498 to 439,465 12094

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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436,907 - +0.1
436,979 - +0.9
436,986 + -1.2
437,437 - +0.8
437,447 + -0.9
437,832 - 12093 mRNA_3725 0.12 -2.3
438,429 + +0.1
438,432 - -0.5
438,445 - +0.8
438,445 + -0.6
438,451 + +0.5
438,459 - +0.4
438,462 - +0.4
439,417 - -0.6

Or see this region's nucleotide sequence