Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3792

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12159 and 12160 are separated by 414 nucleotides12160 and 12161 are separated by 343 nucleotides mRNA_3791: 12159 - K00287 folA dihydrofolate reductase, at 588,857 to 589,593 12159 mRNA_3792: 12160 - K12811 DDX46, PRP5 ATP-dependent RNA helicase DDX46/PRP5, at 590,008 to 594,469 12160 mRNA_3793: 12161 - K15528 FAAH fatty acid amide hydrolase, at 594,813 to 596,952 12161

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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589,606 + -0.3
589,615 + -0.2
589,618 - +1.8
589,618 - +1.2
589,621 - -0.4
589,627 - +0.1
589,634 - -0.1
589,636 + -2.0
589,660 + -0.0
589,926 - +1.1
589,940 + +0.1
593,957 - 12160 mRNA_3792 0.89 +0.7
594,532 + +0.3
594,552 - +0.1
594,555 - +0.1
594,564 - +0.4
594,565 - -0.4
594,568 + +1.2
594,568 + -0.7
594,704 - -1.4
594,721 + +0.0
594,722 + -0.4
594,722 + -0.1
594,723 - +0.5
594,723 - +0.5
594,728 + +0.1
594,731 - +1.5
594,731 + -0.3
594,733 - +0.9
594,734 + +0.0
594,741 + +0.4
594,744 + -0.1
594,887 - +1.5
594,900 - -0.2
594,904 + -0.1
595,044 - 12161 mRNA_3793 0.11 -0.1

Or see this region's nucleotide sequence