Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3818

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12185 and 12186 are separated by 87 nucleotides12186 and 12187 are separated by 263 nucleotides mRNA_3817: 12185 - SUPERFAMILY--SSF52047, at 655,525 to 657,844 12185 mRNA_3818: 12186 - K09650 PARL, PSARL, PCP1 rhomboid-like protein, at 657,932 to 659,126 12186 mRNA_3819: 12187 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 659,390 to 660,393 12187

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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656,934 + 12185 mRNA_3817 0.61 +0.4
656,958 - 12185 mRNA_3817 0.62 +0.0
656,961 - 12185 mRNA_3817 0.62 +0.1
656,962 + 12185 mRNA_3817 0.62 +2.0
657,027 + 12185 mRNA_3817 0.65 +0.5
657,222 - 12185 mRNA_3817 0.73 -0.6
657,234 + 12185 mRNA_3817 0.74 -0.2
657,235 + 12185 mRNA_3817 0.74 -0.8
657,433 - 12185 mRNA_3817 0.82 +0.9
657,438 - 12185 mRNA_3817 0.82 -0.5
657,676 - +0.9
657,704 - -2.4
658,049 - +0.6
658,118 - 12186 mRNA_3818 0.16 -1.5
658,122 + 12186 mRNA_3818 0.16 +1.7
658,455 - 12186 mRNA_3818 0.44 -0.1
658,649 - 12186 mRNA_3818 0.60 -1.1
658,729 - 12186 mRNA_3818 0.67 +0.1
658,843 - 12186 mRNA_3818 0.76 +0.5
658,882 - 12186 mRNA_3818 0.79 +0.8
658,885 + 12186 mRNA_3818 0.80 +1.0
658,978 - 12186 mRNA_3818 0.88 +0.0
659,016 - -3.1
659,059 + -1.5
659,175 - -0.2
659,194 + +0.0
659,476 - -1.7
659,909 - 12187 mRNA_3819 0.52 +0.3

Or see this region's nucleotide sequence