Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4130

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12497 and 12498 are separated by 265 nucleotides12498 and 12499 are separated by 235 nucleotides mRNA_4129: 12497 - K03949 NDUFA5 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 5, at 1,418,367 to 1,418,907 12497 mRNA_4130: 12498 - K14812 NGL2 RNA exonuclease NGL2, at 1,419,173 to 1,421,594 12498 mRNA_4131: 12499 - KOG3783 Uncharacterized conserved protein, at 1,421,830 to 1,424,236 12499

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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1,418,281 - -0.8
1,418,313 - +0.0
1,418,317 - -0.0
1,418,320 - -0.5
1,418,320 - +0.3
1,418,322 + -0.4
1,418,326 - -1.9
1,418,326 + -0.4
1,419,043 + -0.1
1,419,045 + -0.1
1,419,315 - +1.4
1,419,775 + 12498 mRNA_4130 0.25 +1.5
1,420,214 - 12498 mRNA_4130 0.43 +0.5
1,420,225 + 12498 mRNA_4130 0.43 -0.5
1,420,264 - 12498 mRNA_4130 0.45 -0.5
1,420,265 + 12498 mRNA_4130 0.45 -0.1
1,420,515 + 12498 mRNA_4130 0.55 +0.8
1,420,765 + 12498 mRNA_4130 0.66 +0.1
1,420,789 + 12498 mRNA_4130 0.67 -1.5
1,420,806 + 12498 mRNA_4130 0.67 -0.4
1,421,134 - 12498 mRNA_4130 0.81 -0.5
1,421,360 - +1.0
1,421,364 - +0.2
1,421,401 - -3.9
1,421,407 + +0.8
1,421,521 + +2.2
1,421,528 + -1.2
1,421,533 - +0.4
1,421,678 - -0.3
1,421,689 + +0.2
1,421,713 + +1.2
1,421,953 + -0.1
1,422,385 - 12499 mRNA_4131 0.23 -2.5
1,422,385 - 12499 mRNA_4131 0.23 +0.6
1,422,386 + 12499 mRNA_4131 0.23 -0.2
1,422,389 + 12499 mRNA_4131 0.23 +0.6
1,422,396 + 12499 mRNA_4131 0.24 +0.3

Or see this region's nucleotide sequence