Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4169

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12536 and 12537 are separated by 647 nucleotides mRNA_4168: 12536 - K09487 HSP90B, TRA1 heat shock protein 90kDa beta, at 1,519,287 to 1,521,954 12536 mRNA_4169: 12537 - K13299 GSTK1 glutathione S-transferase kappa 1, at 1,522,602 to 1,523,728 12537

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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1,521,929 - -0.3
1,522,195 - -0.2
1,522,225 + -0.0
1,522,357 - +1.7
1,522,366 - +1.3
1,522,368 - -1.1
1,522,373 - -1.1
1,522,386 - +1.7
1,522,389 + -1.6
1,522,522 - +0.1
1,522,532 + +2.4
1,522,539 + -0.0
1,522,540 - -1.6
1,522,591 + +1.1
1,522,847 + 12537 mRNA_4169 0.22 -1.4
1,522,996 - 12537 mRNA_4169 0.35 +0.9
1,523,115 + 12537 mRNA_4169 0.46 +1.1
1,523,421 + 12537 mRNA_4169 0.73 +0.4
1,523,685 - +2.1
1,523,701 - -1.9
1,523,721 - -0.3
1,523,775 - +0.3
1,523,851 - +0.1
1,523,852 - +0.2
1,523,867 - +1.1
1,523,871 + +0.8
1,523,878 - -0.7
1,523,894 - -0.8
1,523,898 + -0.1
1,523,938 - -1.0
1,523,951 + -0.0
1,524,073 - -1.8
1,524,235 - +0.9
1,524,252 + +0.4
1,524,359 + +0.7
1,524,489 + -0.5
1,524,644 - +0.3

Or see this region's nucleotide sequence