Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4208

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12575 and 12576 are separated by 404 nucleotides12576 and 12577 are separated by 184 nucleotides mRNA_4207: 12575 - BLAST similar to An07g08470 [Aspergillus kawachii IFO 4308], at 1,611,743 to 1,613,207 12575 mRNA_4208: 12576 - K17919 SNX4 sorting nexin-4, at 1,613,612 to 1,615,514 12576 mRNA_4209: 12577 - ProSitePatterns-Tyrosine protein kinases specific active-site signature.-PS00109,SUPERFAMILY--SSF56112, at 1,615,699 to 1,618,403 12577

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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1,612,675 + 12575 mRNA_4207 0.64 -0.6
1,612,686 - 12575 mRNA_4207 0.64 +0.7
1,612,855 - 12575 mRNA_4207 0.76 +0.6
1,612,978 - 12575 mRNA_4207 0.84 -0.7
1,612,991 - 12575 mRNA_4207 0.85 +0.5
1,613,128 + +0.0
1,613,168 + -0.3
1,613,276 - +1.1
1,613,286 - -1.4
1,613,295 + +2.1
1,613,312 + -0.5
1,613,457 + +0.9
1,613,566 + -0.1
1,613,570 - -0.0
1,613,615 + +0.3
1,613,722 + -0.6
1,614,565 + 12576 mRNA_4208 0.50 +0.4
1,614,573 - 12576 mRNA_4208 0.50 -0.0
1,614,579 - 12576 mRNA_4208 0.51 +0.4
1,615,291 - 12576 mRNA_4208 0.88 -0.8
1,615,448 - +0.2
1,615,451 + -1.2
1,615,546 - +1.3
1,615,579 + -0.6
1,615,723 - +0.6
1,615,740 + -0.9
1,615,741 + +1.2
1,615,844 + +1.9
1,615,893 - +0.1
1,615,930 + -0.2
1,616,165 + 12577 mRNA_4209 0.17 -0.6
1,616,170 - 12577 mRNA_4209 0.17 +0.9
1,616,192 - 12577 mRNA_4209 0.18 +0.2
1,616,199 + 12577 mRNA_4209 0.18 +1.4
1,616,310 + 12577 mRNA_4209 0.23 -0.0

Or see this region's nucleotide sequence