Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4273

Experiment: Sorted No BODIPY Gate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12640 and 12641 are separated by 386 nucleotides12641 and 12642 are separated by 244 nucleotides mRNA_4272: 12640 - K02433 gatA, QRSL1 aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A, at 1,765,138 to 1,767,269 12640 mRNA_4273: 12641 - BLAST cellular morphogenesis-related protein [Monilioph..., at 1,767,656 to 1,771,232 12641 mRNA_4274: 12642 - K01720 prpD 2-methylcitrate dehydratase, at 1,771,477 to 1,773,946 12642

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
remove
1,767,377 + -0.2
1,767,391 - +0.2
1,767,393 + -0.2
1,767,411 - +1.3
1,767,417 - -0.5
1,767,424 + +1.0
1,767,424 + +0.0
1,767,424 + -0.4
1,767,451 + -0.1
1,767,467 + +1.7
1,767,536 - +0.4
1,767,572 + -2.6
1,767,590 + +0.9
1,767,733 - +1.0
1,767,751 + -0.9
1,767,815 - -0.8
1,767,865 - -0.6
1,768,053 + 12641 mRNA_4273 0.11 -1.3
1,768,056 + 12641 mRNA_4273 0.11 -0.1
1,768,061 - 12641 mRNA_4273 0.11 -0.0
1,768,165 + 12641 mRNA_4273 0.14 -1.9
1,768,174 + 12641 mRNA_4273 0.14 +0.3
1,768,180 - 12641 mRNA_4273 0.15 -0.6
1,768,195 - 12641 mRNA_4273 0.15 -2.3
1,768,281 - 12641 mRNA_4273 0.17 -0.3
1,768,425 + 12641 mRNA_4273 0.21 +0.1
1,768,543 - 12641 mRNA_4273 0.25 -1.4
1,768,906 - 12641 mRNA_4273 0.35 +0.6
1,769,048 - 12641 mRNA_4273 0.39 +0.1
1,769,197 - 12641 mRNA_4273 0.43 +0.5
1,769,343 - 12641 mRNA_4273 0.47 -0.3
1,769,982 + 12641 mRNA_4273 0.65 +0.1
1,770,043 - 12641 mRNA_4273 0.67 +0.0
1,770,048 + 12641 mRNA_4273 0.67 -0.6
1,770,485 - 12641 mRNA_4273 0.79 -1.1
1,770,485 + 12641 mRNA_4273 0.79 +1.1
1,770,678 - 12641 mRNA_4273 0.84 -0.1
1,770,681 - 12641 mRNA_4273 0.85 +0.0
1,770,686 + 12641 mRNA_4273 0.85 -0.4
1,770,942 - +1.2
1,771,054 - -0.0
1,771,093 + -0.4
1,771,093 + +0.2
1,771,108 - +0.3
1,771,117 - -1.4
1,771,210 - +0.0
1,771,232 - -0.4
1,771,234 + -0.2
1,771,242 - -2.0
1,771,245 + +0.5
1,771,259 + +1.4
1,771,382 + -0.3
1,771,404 - +0.4
1,771,413 - -1.7
1,771,427 + +1.6
1,771,449 + +0.8
1,771,557 - -0.4
1,771,578 - -1.8
1,771,699 - +0.4
1,771,702 + -1.3
1,771,706 + -0.1
1,771,715 + +1.7
1,771,880 + 12642 mRNA_4274 0.16 +0.2
1,772,023 - 12642 mRNA_4274 0.22 +0.7

Or see this region's nucleotide sequence