Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4282

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12649 and 12650 are separated by 939 nucleotides12650 and 12651 are separated by 306 nucleotides mRNA_4281: 12649 - K11778 DHDDS, RER2, SRT1 ditrans,polycis-polyprenyl diphosphate synthase, at 1,794,791 to 1,795,923 12649 mRNA_4282: 12650 - Hypothetical Protein, at 1,796,863 to 1,797,558 12650 mRNA_4283: 12651 - KOG2383 Predicted ATPase, at 1,797,865 to 1,800,888 12651

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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1,795,993 + +0.4
1,796,155 - -0.1
1,796,171 + +0.4
1,796,191 - -1.0
1,796,210 - +1.7
1,796,781 - +0.2
1,796,879 + +0.0
1,797,060 + 12650 mRNA_4282 0.28 -0.6
1,797,216 + 12650 mRNA_4282 0.51 -2.1
1,797,336 + 12650 mRNA_4282 0.68 +0.7
1,797,413 - 12650 mRNA_4282 0.79 +1.2
1,797,761 - +1.5
1,797,781 - -1.4
1,797,785 + +0.7
1,797,795 - +0.5
1,797,801 - +0.2
1,797,802 + -0.4
1,797,946 - -0.7
1,797,948 - -1.5
1,797,950 - +0.2

Or see this region's nucleotide sequence