Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4290

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12657 and 12658 are separated by 225 nucleotides12658 and 12659 are separated by 734 nucleotides mRNA_4289: 12657 - K15445 TRMT10A, TRM10, RG9MTD2 tRNA (guanine9-N1)-methyltransferase, at 1,812,694 to 1,814,089 12657 mRNA_4290: 12658 - Hypothetical Protein, at 1,814,315 to 1,814,636 12658 mRNA_4291: 12659 - Hypothetical Protein, at 1,815,371 to 1,816,823 12659

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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1,813,591 + 12657 mRNA_4289 0.64 -2.1
1,813,716 - 12657 mRNA_4289 0.73 +1.5
1,813,734 - 12657 mRNA_4289 0.74 +0.2
1,813,895 + 12657 mRNA_4289 0.86 -1.9
1,813,908 + 12657 mRNA_4289 0.87 +0.5
1,814,200 - +0.5
1,814,266 - +0.8
1,814,347 - +1.3
1,814,457 + 12658 mRNA_4290 0.44 +1.6
1,814,726 - +0.7
1,814,741 + -0.7
1,814,850 - +0.1
1,814,887 + -0.3
1,814,917 + -0.5
1,815,019 + +0.4
1,815,177 - +1.5
1,815,188 - +0.9
1,815,195 + -1.3
1,815,196 - +0.9
1,815,196 - +0.5
1,815,368 - -1.0
1,815,369 + -2.7

Or see this region's nucleotide sequence