Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4294

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12661 and 12662 are separated by 218 nucleotides12662 and 12663 are separated by 204 nucleotides mRNA_4293: 12661 - KOG1375 Beta tubulin, at 1,820,426 to 1,822,919 12661 mRNA_4294: 12662 - K08851 TP53RK, PRPK, BUD32 TP53 regulating kinase and related kinases, at 1,823,138 to 1,824,204 12662 mRNA_4295: 12663 - K15454 PUS9 tRNA pseudouridine synthase 9, at 1,824,409 to 1,826,962 12663

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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1,822,800 + -0.5
1,822,937 + -0.8
1,824,220 + +0.4
1,824,231 - -0.0
1,824,242 - +0.1
1,824,245 - +0.4
1,824,267 + -0.2
1,824,298 - -0.0
1,824,362 + +0.6
1,824,540 + -0.1
1,824,561 + +1.3
1,824,561 - -1.4
1,824,562 - +0.2
1,824,678 + 12663 mRNA_4295 0.11 -1.0
1,824,686 + 12663 mRNA_4295 0.11 +0.0
1,824,859 - 12663 mRNA_4295 0.18 +0.2
1,824,860 - 12663 mRNA_4295 0.18 +2.1
1,824,895 - 12663 mRNA_4295 0.19 -2.1

Or see this region's nucleotide sequence