Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4299

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12666 and 12667 are separated by 228 nucleotides12667 and 12668 are separated by 268 nucleotides mRNA_4298: 12666 - Hypothetical Protein, at 1,831,487 to 1,832,179 12666 mRNA_4299: 12667 - K12617 PATL1, PAT1 DNA topoisomerase 2-associated protein PAT1, at 1,832,408 to 1,835,999 12667 mRNA_4300: 12668 - K08257 E3.2.1.101 mannan endo-1,6-alpha-mannosidase, at 1,836,268 to 1,838,617 12668

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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1,831,470 - +0.6
1,831,501 - +0.4
1,831,516 - -1.1
1,831,951 - 12666 mRNA_4298 0.67 -2.4
1,832,243 + -0.8
1,832,251 + +0.7
1,832,268 - +0.6
1,832,275 + +0.6
1,832,352 + +0.5
1,832,558 + -0.6
1,832,836 + 12667 mRNA_4299 0.12 -0.7
1,833,724 + 12667 mRNA_4299 0.37 +0.3
1,836,000 + +0.3
1,836,164 + +0.5
1,836,171 + +0.7
1,836,183 + -1.0
1,836,185 - -0.2
1,836,188 + +0.1
1,836,189 + -0.7
1,836,222 + +0.7
1,836,730 + 12668 mRNA_4300 0.20 +0.1
1,836,958 - 12668 mRNA_4300 0.29 +0.8

Or see this region's nucleotide sequence