Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4441

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12808 and 12809 are separated by 488 nucleotides12809 and 12810 are separated by 183 nucleotides mRNA_4440: 12808 - KOG2439 Nuclear architecture related protein, at 183,991 to 186,593 12808 mRNA_4441: 12809 - SUPERFAMILY--SSF52047, at 187,082 to 188,392 12809 mRNA_4442: 12810 - SUPERFAMILY--SSF52047, at 188,576 to 190,157 12810

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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186,705 - -1.6
186,776 - -0.4
186,894 + +0.6
187,167 + -0.2
187,173 + +0.5
187,326 - 12809 mRNA_4441 0.19 -0.9
187,335 + 12809 mRNA_4441 0.19 +0.9
187,745 - 12809 mRNA_4441 0.51 -1.1
187,930 + 12809 mRNA_4441 0.65 -2.0
187,960 + 12809 mRNA_4441 0.67 +0.2
188,045 - 12809 mRNA_4441 0.73 -0.4
188,052 + 12809 mRNA_4441 0.74 +2.0
188,175 - 12809 mRNA_4441 0.83 -0.1
188,176 + 12809 mRNA_4441 0.83 +0.2
188,394 + -0.4
188,490 + +0.4
188,500 - +0.1
188,522 + +0.6
188,641 - +1.3
188,659 + +0.9
188,666 - -0.4
188,669 + +0.3
188,829 + 12810 mRNA_4442 0.16 -1.0
188,920 - 12810 mRNA_4442 0.22 +1.1
188,990 + 12810 mRNA_4442 0.26 +0.4
189,045 - 12810 mRNA_4442 0.30 +0.6
189,051 + 12810 mRNA_4442 0.30 +0.3
189,108 + 12810 mRNA_4442 0.34 +0.7
189,231 + 12810 mRNA_4442 0.41 -0.3
189,264 - 12810 mRNA_4442 0.43 +1.2
189,375 + 12810 mRNA_4442 0.51 +1.1
189,382 - 12810 mRNA_4442 0.51 +0.7

Or see this region's nucleotide sequence