Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4510

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12877 and 12878 are separated by 689 nucleotides mRNA_4509: 12877 - HMMPfam-Ctr copper transporter family-PF04145, at 345,259 to 347,501 12877 mRNA_4510: 12878 - KOG0627 Heat shock transcription factor, at 348,191 to 349,956 12878

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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347,377 - -2.4
347,686 - -1.3
347,813 - -2.6
347,976 - +0.1
348,130 - -0.4
348,312 - -0.2
348,418 + 12878 mRNA_4510 0.13 -2.6
348,789 + 12878 mRNA_4510 0.34 -0.2
348,978 - 12878 mRNA_4510 0.45 +0.3
349,135 + 12878 mRNA_4510 0.53 -1.7
349,271 - 12878 mRNA_4510 0.61 -0.2
349,413 + 12878 mRNA_4510 0.69 -0.3
349,691 - 12878 mRNA_4510 0.85 -0.3
349,864 + -0.1
349,957 + -0.7
349,980 - +0.4
349,990 + +0.4
349,995 - -1.6
350,011 + +0.1
350,031 - -1.3
350,077 - -0.3
350,133 + +2.1
350,143 - -1.9
350,159 + -0.2
350,177 + +0.8
350,178 - -0.2
350,183 + -0.0
350,191 + -1.8
350,211 + -1.9
350,329 - +0.2
350,449 + +0.8
350,457 + -0.9
350,479 - -1.2
350,484 + -0.4
350,586 - +0.0
350,603 + +0.1
350,650 - -0.0
350,797 + +0.6
350,800 - -0.1
350,803 + -0.5
350,817 + -0.9
350,817 + -0.6
350,921 - -1.0
350,941 - -0.0
350,947 + +0.0
350,948 - +0.7

Or see this region's nucleotide sequence