Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4526

Experiment: Sorted No BODIPY Gate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12893 and 12894 are separated by 256 nucleotides12894 and 12895 are separated by 262 nucleotides mRNA_4525: 12893 - KOG0143 Iron/ascorbate family oxidoreductases, at 381,008 to 382,487 12893 mRNA_4526: 12894 - K12446 E2.7.1.46 L-arabinokinase, at 382,744 to 384,550 12894 mRNA_4527: 12895 - SUPERFAMILY--SSF50129,SUPERFAMILY--SSF51735, at 384,813 to 386,229 12895

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
remove
381,808 - 12893 mRNA_4525 0.54 +0.6
381,812 + 12893 mRNA_4525 0.54 +0.1
382,086 + 12893 mRNA_4525 0.73 -1.3
382,112 + 12893 mRNA_4525 0.75 +0.6
382,142 - 12893 mRNA_4525 0.77 +1.9
382,244 - 12893 mRNA_4525 0.84 +1.9
382,259 + 12893 mRNA_4525 0.85 +1.7
382,285 - 12893 mRNA_4525 0.86 +0.2
382,291 - 12893 mRNA_4525 0.87 +0.2
382,291 - 12893 mRNA_4525 0.87 -1.0
382,298 + 12893 mRNA_4525 0.87 -0.4
382,400 + -0.6
382,405 + +0.1
382,518 - +0.5
382,676 - +0.1
382,684 + -0.1
382,807 - +0.5
382,828 - -1.7
382,934 + 12894 mRNA_4526 0.11 +1.8
382,979 + 12894 mRNA_4526 0.13 +0.5
383,104 + 12894 mRNA_4526 0.20 +0.4
383,233 - 12894 mRNA_4526 0.27 +0.2
383,820 - 12894 mRNA_4526 0.60 +1.2
383,858 - 12894 mRNA_4526 0.62 +0.7
383,877 + 12894 mRNA_4526 0.63 +0.5
384,590 - -0.1
384,608 - +0.1
384,904 - -0.0
385,233 + 12895 mRNA_4527 0.30 -3.1
385,366 + 12895 mRNA_4527 0.39 -1.3
385,369 - 12895 mRNA_4527 0.39 -0.0
385,379 + 12895 mRNA_4527 0.40 -0.3

Or see this region's nucleotide sequence