Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4624

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12991 and 12992 are separated by 297 nucleotides12992 and 12993 are separated by 300 nucleotides mRNA_4623: 12991 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF81383, at 625,237 to 628,203 12991 mRNA_4624: 12992 - Hypothetical Protein, at 628,501 to 629,051 12992 mRNA_4625: 12993 - K09660 MPDU1 mannose-P-dolichol utilization defect 1, at 629,352 to 630,709 12993

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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628,098 + -0.6
628,566 + 12992 mRNA_4624 0.12 +0.1
628,844 + 12992 mRNA_4624 0.62 -0.0
629,233 - -0.9
629,248 + +0.6
629,258 - -2.0
629,269 - -0.6
629,273 + +0.1
629,409 + -0.4
629,413 + -0.0
629,684 + 12993 mRNA_4625 0.24 -0.4
629,823 - 12993 mRNA_4625 0.35 -0.1

Or see this region's nucleotide sequence