Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4673

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13040 and 13041 are separated by 379 nucleotides13041 and 13042 are separated by 525 nucleotides mRNA_4672: 13040 - K11979 UBR7 E3 ubiquitin-protein ligase UBR7, at 742,031 to 743,506 13040 mRNA_4673: 13041 - K01069 E3.1.2.6, gloB hydroxyacylglutathione hydrolase, at 743,886 to 745,346 13041 mRNA_4674: 13042 - K08150 SLC2A13, ITR MFS transporter, SP family, solute carrier family 2 (myo-inositol transporter), member 13, at 745,872 to 747,839 13042

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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742,954 - 13040 mRNA_4672 0.63 +0.5
743,071 + 13040 mRNA_4672 0.70 -0.7
743,532 + -1.4
743,809 + -0.3
743,814 - +1.2
743,824 - +0.8
743,993 + +1.4
743,998 + -0.6
744,019 - -0.9
744,278 + 13041 mRNA_4673 0.27 +0.8
744,954 + 13041 mRNA_4673 0.73 -0.8
744,966 + 13041 mRNA_4673 0.74 +1.2
745,219 - -0.1
745,228 + -0.2
745,295 + +0.7
745,330 - -0.8
745,362 - -0.5
745,409 - -0.5
745,414 - -0.1
745,415 - +0.7
745,419 - +0.2
745,420 - -3.1
745,421 + +1.3
745,421 + +0.1
745,424 + +0.0
745,428 - +0.1
745,432 + +0.4
745,434 - +0.0
745,437 + -2.0
745,450 - +1.3
745,455 + -0.2
745,456 - -1.3
745,496 - +1.2
745,502 + +0.2
745,552 + -0.7
745,562 + -0.5
745,569 + +0.6
745,574 - -0.3
745,581 - +0.3
745,585 + +1.1
745,591 + +0.5
745,654 - -0.5
745,714 - -0.4
745,717 - -1.2
745,733 + +0.0
745,734 + -1.7
745,756 + -0.4
745,774 + -1.4
745,904 - +0.1
745,905 - +1.6
746,216 + 13042 mRNA_4674 0.17 +0.4

Or see this region's nucleotide sequence