Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4693

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13060 and 13061 are separated by 646 nucleotides mRNA_4692: 13060 - K00559 E2.1.1.41, SMT1, ERG6 sterol 24-C-methyltransferase, at 788,429 to 789,828 13060 mRNA_4693: 13061 - Hypothetical Protein, at 790,475 to 790,930 13061

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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789,915 + -0.5
789,979 + +0.7
789,982 - +1.2
789,996 - -0.7
790,011 + -1.0
790,120 + +0.7
790,136 + +0.2
790,136 + -0.6
790,146 - -0.3
790,231 + +0.2
790,281 - +0.2
790,286 + +0.2
790,287 - -1.4
790,411 - +0.6
790,422 + +0.4
790,424 - -0.7
790,441 - -1.2
790,481 - +2.1
790,566 - 13061 mRNA_4693 0.20 -0.8
790,584 - 13061 mRNA_4693 0.24 -1.5
790,606 - 13061 mRNA_4693 0.29 -1.9
791,296 - +0.8
791,299 + -2.5
791,310 + +1.6
791,914 - -2.0

Or see this region's nucleotide sequence