Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4715

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13082 and 13083 are separated by 115 nucleotides13083 and 13084 are separated by 222 nucleotides mRNA_4714: 13082 - K01183 E3.2.1.14 chitinase, at 838,359 to 840,435 13082 mRNA_4715: 13083 - KOG1730 Thioredoxin-like protein, at 840,551 to 841,550 13083 mRNA_4716: 13084 - SUPERFAMILY--SSF55753, at 841,773 to 842,668 13084

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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839,580 + 13082 mRNA_4714 0.59 -0.1
839,619 + 13082 mRNA_4714 0.61 -0.1
839,768 + 13082 mRNA_4714 0.68 -1.1
839,872 - 13082 mRNA_4714 0.73 -0.8
839,881 + 13082 mRNA_4714 0.73 -1.7
840,191 - 13082 mRNA_4714 0.88 -2.1
840,481 - +0.6
840,511 - +0.5
840,650 + +0.6
840,780 + 13083 mRNA_4715 0.23 -0.6
841,057 + 13083 mRNA_4715 0.51 -1.0
841,060 + 13083 mRNA_4715 0.51 -0.6
841,237 + 13083 mRNA_4715 0.69 +0.4
841,369 - 13083 mRNA_4715 0.82 +0.6
841,376 + 13083 mRNA_4715 0.82 +2.0
841,508 + -0.0
841,777 + +0.5
841,792 + -1.1
841,799 - +0.2
841,801 + -0.8
841,945 - 13084 mRNA_4716 0.19 -1.8
841,949 - 13084 mRNA_4716 0.20 +1.4
841,953 - 13084 mRNA_4716 0.20 +1.7

Or see this region's nucleotide sequence