Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4725

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13093 and 13094 are separated by 392 nucleotides mRNA_4725: 13093 - Hypothetical Protein, at 865,355 to 866,563 13093 mRNA_4726: 13094 - KOG3214 Uncharacterized Zn ribbon-containing protein, at 866,956 to 867,873 13094

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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864,523 - +0.4
864,696 - +0.1
864,714 + -0.2
864,743 + +1.8
864,841 + -0.4
864,845 + +0.4
864,990 - +0.2
864,994 - +1.0
864,995 - +0.5
864,996 + +0.2
865,148 - -0.5
865,152 - -0.7
865,268 - +0.1
865,974 - 13093 mRNA_4725 0.51 -0.3
865,984 + 13093 mRNA_4725 0.52 -1.3
866,002 + 13093 mRNA_4725 0.54 +2.3
866,142 + 13093 mRNA_4725 0.65 +0.3
866,576 + +0.2
866,711 + -0.4
866,721 - -0.2
866,733 - +0.1
866,844 - -0.8
866,846 - +0.1
866,854 + +0.3
866,870 + +1.3
866,876 + -0.2
866,877 + -0.2
867,012 - +0.3
867,027 + -0.4
867,092 - 13094 mRNA_4726 0.15 +1.3
867,148 - 13094 mRNA_4726 0.21 +0.6
867,150 - 13094 mRNA_4726 0.21 -0.8
867,156 + 13094 mRNA_4726 0.22 -1.6
867,434 + 13094 mRNA_4726 0.52 -0.7
867,445 - 13094 mRNA_4726 0.53 +0.4
867,448 + 13094 mRNA_4726 0.54 +0.3
867,468 + 13094 mRNA_4726 0.56 -0.9
867,554 - 13094 mRNA_4726 0.65 +0.1

Or see this region's nucleotide sequence