Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4727

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13094 and 13095 are separated by 279 nucleotides13095 and 13096 are separated by 70 nucleotides mRNA_4726: 13094 - KOG3214 Uncharacterized Zn ribbon-containing protein, at 866,956 to 867,873 13094 mRNA_4727: 13095 - Hypothetical Protein, at 868,153 to 868,831 13095 mRNA_4728: 13096 - HMMPfam-CUE domain-PF02845,HMMPfam-2OG-Fe(II) oxygenase superfamily-PF13532,ProSiteProfiles-CUE domain profile.-PS51140,ProSiteProfiles-Fe(2+) 2-oxoglutarate dioxygenase domain profile.-PS51471,SUPERFAMILY--SSF51197, at 868,902 to 870,638 13096

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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867,156 + 13094 mRNA_4726 0.22 -1.6
867,434 + 13094 mRNA_4726 0.52 -0.7
867,445 - 13094 mRNA_4726 0.53 +0.4
867,448 + 13094 mRNA_4726 0.54 +0.3
867,468 + 13094 mRNA_4726 0.56 -0.9
867,554 - 13094 mRNA_4726 0.65 +0.1
867,867 - -2.4
867,880 - -0.2
867,923 - -1.5
868,012 - +0.3
868,303 + 13095 mRNA_4727 0.22 -2.4
868,448 + 13095 mRNA_4727 0.43 -1.6
868,595 + 13095 mRNA_4727 0.65 -0.1
868,598 + 13095 mRNA_4727 0.66 -1.4
868,608 - 13095 mRNA_4727 0.67 -0.3
868,615 - 13095 mRNA_4727 0.68 -0.1
868,719 - 13095 mRNA_4727 0.83 -1.6
868,727 - 13095 mRNA_4727 0.85 +0.4
868,799 + -0.8
868,864 - -1.4
868,873 - +0.4
868,885 + -1.7
869,138 - 13096 mRNA_4728 0.14 -1.8
869,611 - 13096 mRNA_4728 0.41 -1.3
869,768 - 13096 mRNA_4728 0.50 +0.8

Or see this region's nucleotide sequence