Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4934

Experiment: Sorted No BODIPY Gate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13301 and 13302 are separated by 207 nucleotides13302 and 13303 are separated by 544 nucleotides mRNA_4933: 13301 - K14972 PAXIP1, PTIP PAX-interacting protein 1, at 1,349,859 to 1,354,237 13301 mRNA_4934: 13302 - K00611 OTC, argF, argI ornithine carbamoyltransferase, at 1,354,445 to 1,355,871 13302 mRNA_4935: 13303 - BLAST salivary gland secretion 1 [Moniliophthora roreri..., at 1,356,416 to 1,359,547 13303

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
remove
1,353,541 - 13301 mRNA_4933 0.84 -1.1
1,353,661 + 13301 mRNA_4933 0.87 -0.4
1,354,222 - -0.7
1,354,357 + +0.0
1,354,386 - +0.9
1,354,389 - -0.8
1,354,389 - +0.7
1,354,395 + +0.4
1,354,396 + +0.7
1,354,403 - -0.4
1,354,407 - +0.7
1,354,417 - +0.1
1,354,435 - +0.6
1,354,571 + -4.4
1,354,702 - 13302 mRNA_4934 0.18 -1.6
1,354,714 + 13302 mRNA_4934 0.19 -2.5
1,355,019 + 13302 mRNA_4934 0.40 -0.7
1,355,136 + 13302 mRNA_4934 0.48 -3.4
1,355,241 - 13302 mRNA_4934 0.56 -1.1
1,355,424 - 13302 mRNA_4934 0.69 -1.6
1,355,753 + -4.6
1,355,904 - +0.8
1,355,978 + -0.2
1,356,326 - +0.2
1,356,338 - -1.3
1,356,355 + -0.0

Or see this region's nucleotide sequence