Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4982

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13349 and 13350 are separated by 455 nucleotides13350 and 13351 are separated by 206 nucleotides mRNA_4981: 13349 - KOG2117 Uncharacterized conserved protein, at 1,469,981 to 1,471,275 13349 mRNA_4982: 13350 - K17879 NUDT7 peroxisomal coenzyme A diphosphatase NUDT7, at 1,471,731 to 1,473,077 13350 mRNA_4983: 13351 - SUPERFAMILY--SSF48371, at 1,473,284 to 1,476,238 13351

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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1,471,434 - -0.1
1,471,449 - +1.8
1,471,452 + -0.7
1,471,456 - -2.2
1,471,466 + +0.3
1,471,561 - -0.4
1,471,632 + +0.1
1,471,764 - +0.3
1,471,764 - +0.6
1,471,915 - 13350 mRNA_4982 0.14 +1.0
1,472,105 - 13350 mRNA_4982 0.28 +0.6
1,472,241 + 13350 mRNA_4982 0.38 -0.2
1,472,369 + 13350 mRNA_4982 0.47 +0.4
1,472,632 - 13350 mRNA_4982 0.67 +0.0
1,472,745 - 13350 mRNA_4982 0.75 +0.3
1,472,893 + 13350 mRNA_4982 0.86 -0.2
1,473,183 - +0.5
1,473,202 + +0.9
1,473,207 - +0.1
1,473,355 - +0.7
1,473,357 - -0.2
1,473,490 - +0.6
1,473,500 - +0.6

Or see this region's nucleotide sequence