Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5014

Experiment: Sorted No BODIPY Gate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13382 and 13383 are separated by 480 nucleotides mRNA_5014: 13382 - K01621 xfp, xpk xylulose-5-phosphate/fructose-6-phosphate phosphoketolase, at 1,549,250 to 1,553,078 13382 mRNA_5015: 13383 - K00925 ackA acetate kinase, at 1,553,559 to 1,555,008 13383

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
remove
1,548,271 + +0.1
1,548,279 + +1.1
1,548,297 - -1.0
1,548,299 - -1.2
1,548,302 + -0.2
1,548,305 - -1.5
1,548,311 - -2.1
1,548,311 - -1.5
1,548,342 + +0.5
1,548,346 - +1.1
1,548,355 - +0.1
1,548,361 + -1.0
1,548,362 + +0.9
1,548,363 - +1.2
1,548,365 + +0.3
1,548,369 - +0.1
1,548,375 + -0.5
1,548,380 - -0.1
1,548,385 - -0.4
1,548,385 - +1.1
1,548,397 - -0.2
1,548,398 - +0.9
1,548,403 + +1.1
1,548,404 - -1.3
1,548,411 + -1.1
1,548,412 - +1.9
1,548,416 + +0.5
1,548,421 - +0.0
1,548,423 + +1.6
1,548,426 + +0.2
1,548,435 + -0.3
1,548,461 - -0.7
1,548,488 + +1.9
1,548,503 - -0.5
1,548,544 + -1.2
1,548,571 + -0.5
1,548,594 - -1.6
1,548,609 - +1.3
1,548,613 + -0.5
1,548,616 - -1.6
1,548,627 - -1.2
1,548,631 - -0.2
1,548,633 - -0.6
1,548,643 - +0.6
1,548,651 + +0.7
1,548,654 - -3.0
1,548,655 - +0.5
1,548,655 + -0.3
1,548,662 - -0.5
1,548,665 + +1.4
1,548,676 - -0.8
1,548,716 + -1.8
1,548,724 + -0.2
1,548,725 - +1.2
1,548,757 - -1.0
1,548,757 + -0.8
1,548,760 + -1.8
1,548,761 - +0.3
1,548,806 - +0.4
1,548,825 + -1.0
1,548,829 - -1.3
1,548,858 + -0.7
1,548,904 - -0.3
1,548,947 - -0.3
1,548,951 + -0.4
1,548,959 + +0.1
1,549,046 - -0.2
1,549,092 - +1.3
1,549,101 + +0.8
1,549,102 - +1.9
1,549,127 + +0.6
1,549,151 + -0.7
1,549,152 - +0.7
1,549,187 + +0.4
1,549,217 - -1.6
1,549,282 - -1.3
1,549,342 - -0.6
1,549,372 - +1.2
1,549,382 - -0.6
1,549,415 - -0.1
1,549,503 + +0.5
1,549,519 - -1.1
1,549,589 - -2.4
1,549,591 - -0.6
1,549,684 - 13382 mRNA_5014 0.11 -0.2
1,549,697 + 13382 mRNA_5014 0.12 +0.6
1,549,941 + 13382 mRNA_5014 0.18 -0.2
1,549,983 + 13382 mRNA_5014 0.19 -0.6
1,550,040 + 13382 mRNA_5014 0.21 +0.2
1,550,040 + 13382 mRNA_5014 0.21 +1.1
1,550,062 + 13382 mRNA_5014 0.21 -1.0
1,550,096 + 13382 mRNA_5014 0.22 +0.6
1,550,140 + 13382 mRNA_5014 0.23 +0.2
1,550,252 - 13382 mRNA_5014 0.26 +2.2
1,550,368 + 13382 mRNA_5014 0.29 -1.3
1,550,372 + 13382 mRNA_5014 0.29 -1.5
1,550,528 + 13382 mRNA_5014 0.33 -0.6
1,550,708 - 13382 mRNA_5014 0.38 +0.7
1,550,801 - 13382 mRNA_5014 0.41 +0.9
1,550,841 + 13382 mRNA_5014 0.42 +0.5
1,550,930 + 13382 mRNA_5014 0.44 -0.1
1,550,965 + 13382 mRNA_5014 0.45 +0.2
1,551,202 - 13382 mRNA_5014 0.51 -1.6
1,551,277 + 13382 mRNA_5014 0.53 -0.3
1,551,289 - 13382 mRNA_5014 0.53 -0.4
1,551,417 - 13382 mRNA_5014 0.57 -0.7
1,551,493 + 13382 mRNA_5014 0.59 +0.6
1,551,626 + 13382 mRNA_5014 0.62 -1.6
1,551,647 - 13382 mRNA_5014 0.63 +0.8
1,551,713 + 13382 mRNA_5014 0.64 -2.3
1,551,813 + 13382 mRNA_5014 0.67 -0.9
1,552,174 - 13382 mRNA_5014 0.76 -0.0
1,552,202 + 13382 mRNA_5014 0.77 -1.4
1,552,350 - 13382 mRNA_5014 0.81 -2.6
1,552,416 - 13382 mRNA_5014 0.83 +1.1
1,552,523 + 13382 mRNA_5014 0.85 -1.8
1,552,690 + 13382 mRNA_5014 0.90 -1.0
1,552,763 - +0.2
1,552,839 - -1.0
1,552,845 + -0.3
1,552,985 - +0.4
1,553,003 + +2.1
1,553,084 - +0.6
1,553,108 + +0.1
1,553,249 + +0.7
1,553,273 + +0.2
1,553,283 - -1.3
1,553,285 + -0.9
1,553,287 + +0.0
1,553,290 - -2.8
1,553,292 - -1.0
1,553,293 - +0.2
1,553,294 + -1.1
1,553,298 + +1.7
1,553,298 + -0.0
1,553,301 - -0.6
1,553,303 - +1.0
1,553,306 + -0.1
1,553,310 + -0.3
1,553,311 + -1.4
1,553,313 + -1.7
1,553,313 - +0.3
1,553,316 - -0.2
1,553,318 - -1.9
1,553,323 + -0.0
1,553,336 + -1.0
1,553,344 + +1.1
1,553,364 - +1.0
1,553,371 + +0.7
1,553,383 - -0.6
1,553,384 + -2.0
1,553,394 + -0.7
1,553,396 - -0.9
1,553,403 + -1.2
1,553,413 + +0.2
1,553,416 - +0.3
1,553,417 + -0.3
1,553,426 - -0.2
1,553,427 + +0.1
1,553,428 - -0.4
1,553,437 + +0.4
1,553,445 + -0.8
1,553,445 + -1.4
1,553,448 + +0.3
1,553,451 + +0.2
1,553,451 - -2.8
1,553,460 + +0.8
1,553,484 + -1.0
1,553,485 - +0.2
1,553,485 - -0.3
1,553,491 - -2.4
1,553,602 - +0.3
1,553,603 + -0.4
1,553,606 - -0.5
1,553,719 + 13383 mRNA_5015 0.11 -1.1
1,553,758 + 13383 mRNA_5015 0.14 +1.3
1,553,772 + 13383 mRNA_5015 0.15 -2.0
1,553,869 + 13383 mRNA_5015 0.21 -1.4

Or see this region's nucleotide sequence