Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5147

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13514 and 13515 are separated by 915 nucleotides mRNA_5146: 13514 - Hypothetical Protein, at 12,998 to 14,215 13514 mRNA_5147: 13515 - Hypothetical Protein, at 15,131 to 16,351 13515

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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14,146 + -0.7
14,309 + -1.3
14,337 - -0.5
14,340 - -1.1
14,341 + +0.2
14,348 - -0.1
14,350 + +0.6
14,357 + +0.7
14,457 - -1.7
14,459 + +0.5
14,480 - +2.0
14,494 - +1.8
14,494 - +0.4
14,495 + +0.9
14,496 + +0.2
14,504 + -0.2
14,504 + +0.7
14,504 + +1.6
14,504 + +0.4
14,508 + +0.0
14,646 + +0.2
14,709 + +1.0
14,785 + +0.2
14,794 + +1.4
15,169 + +0.5
15,184 + -0.1
15,219 + +0.5
15,244 + -1.2
15,356 + 13515 mRNA_5147 0.18 +0.2
15,381 + 13515 mRNA_5147 0.20 -0.9
15,386 + 13515 mRNA_5147 0.21 +0.4
15,677 + 13515 mRNA_5147 0.45 +0.6
15,928 - 13515 mRNA_5147 0.65 -0.0
15,938 - 13515 mRNA_5147 0.66 +1.1
16,093 + 13515 mRNA_5147 0.79 -0.9
16,099 + 13515 mRNA_5147 0.79 +0.8
16,205 + 13515 mRNA_5147 0.88 +1.0
16,231 - +0.8
16,515 - +0.8
16,520 - +1.7
16,535 + +0.9
16,621 - +0.2
16,665 + -0.0
16,687 + -0.5
16,710 + +0.7
16,716 + +0.7
16,791 + +0.1
16,949 - -0.3
16,966 - -1.0
16,973 + +1.0
16,983 + +0.6
16,985 + -2.0
16,986 + +0.4
16,988 + +0.2
16,989 - -0.3
16,992 + +0.5
16,994 - -0.2
16,997 + +0.6
17,006 + +0.1
17,026 + -2.1
17,117 - -1.1
17,123 - +1.4
17,151 + -0.4
17,284 - -1.8
17,285 + +0.2

Or see this region's nucleotide sequence