Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5149

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13516 and 13517 are separated by 439 nucleotides13517 and 13518 are separated by 281 nucleotides mRNA_5148: 13516 - K17918 SNX3_12 sorting nexin-3/12, at 17,697 to 18,440 13516 mRNA_5149: 13517 - Hypothetical Protein, at 18,880 to 20,047 13517 mRNA_5150: 13518 - Hypothetical Protein, at 20,329 to 21,379 13518

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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17,973 + 13516 mRNA_5148 0.37 -1.3
18,229 + 13516 mRNA_5148 0.72 -3.0
18,306 + 13516 mRNA_5148 0.82 -0.1
18,445 + +1.5
18,531 + -0.6
18,594 - -1.5
18,604 + -0.7
18,622 + +1.0
18,726 + +0.2
18,769 + +0.3
18,917 + +0.9
18,926 - -0.8
18,987 - -0.1
19,031 + 13517 mRNA_5149 0.13 +0.6
19,047 - 13517 mRNA_5149 0.14 +0.3
19,051 + 13517 mRNA_5149 0.15 +1.0
19,051 + 13517 mRNA_5149 0.15 +0.3
19,054 - 13517 mRNA_5149 0.15 +0.6
19,060 + 13517 mRNA_5149 0.15 +0.6
19,178 - 13517 mRNA_5149 0.26 +0.3
19,187 - 13517 mRNA_5149 0.26 -0.2
19,194 + 13517 mRNA_5149 0.27 +0.5
19,204 + 13517 mRNA_5149 0.28 -0.2
19,209 + 13517 mRNA_5149 0.28 -0.3
19,351 + 13517 mRNA_5149 0.40 +0.7
19,369 - 13517 mRNA_5149 0.42 -1.3
19,641 + 13517 mRNA_5149 0.65 -0.5
19,735 + 13517 mRNA_5149 0.73 +0.6
19,763 + 13517 mRNA_5149 0.76 +0.3
19,962 - -1.3
20,503 - 13518 mRNA_5150 0.17 -0.1
20,678 + 13518 mRNA_5150 0.33 +0.9
20,756 - 13518 mRNA_5150 0.41 +0.0
21,003 - 13518 mRNA_5150 0.64 +0.1

Or see this region's nucleotide sequence