Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5170

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13537 and 13538 are separated by 449 nucleotides13538 and 13539 are separated by 455 nucleotides mRNA_5169: 13537 - Hypothetical Protein, at 62,559 to 64,260 13537 mRNA_5170: 13538 - Hypothetical Protein, at 64,710 to 65,306 13538 mRNA_5171: 13539 - KOG2262 Sexual differentiation process protein ISP4, at 65,762 to 68,577 13539

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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63,720 + 13537 mRNA_5169 0.68 +0.0
63,868 + 13537 mRNA_5169 0.77 -0.9
63,869 + 13537 mRNA_5169 0.77 -1.1
64,004 - 13537 mRNA_5169 0.85 +0.2
64,030 + 13537 mRNA_5169 0.86 -0.0
64,030 + 13537 mRNA_5169 0.86 +0.3
64,154 - -0.2
64,173 + -1.8
64,180 + -1.0
64,221 + +1.2
64,302 + -0.0
64,315 - -0.9
64,334 - -0.8
64,341 + +0.1
64,343 - -1.1
64,343 + +0.9
64,348 + -1.0
64,358 + +1.3
64,522 + +0.2
65,233 + 13538 mRNA_5170 0.88 -0.2
65,514 + -0.2
65,527 - -0.3
65,611 + +0.7
65,614 + -1.5
65,672 - +0.9
65,673 + +1.2
65,676 + +0.5
65,684 - +0.8
65,691 - -0.7
65,852 + -1.7
65,950 - -0.6
66,256 - 13539 mRNA_5171 0.18 -2.2
66,263 - 13539 mRNA_5171 0.18 -1.8

Or see this region's nucleotide sequence