Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5384

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt mRNA_5384: 13752 - HMMPfam-RNase H-PF00075,ProSiteProfiles-RNase H domain profile.-PS50879,SUPERFAMILY--SSF53098, at 614,894 to 615,202 13752

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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613,902 - +0.7
614,024 - +0.7
614,117 + -4.0
614,135 - +0.3
614,386 - -0.6
614,714 - -0.2
614,763 - -0.8
614,772 + -0.1
614,788 - +0.1
614,884 - -1.2
614,895 + +0.1
614,932 + 13752 mRNA_5384 0.12 -0.7
615,054 - 13752 mRNA_5384 0.52 +0.6
615,067 + 13752 mRNA_5384 0.56 -1.0
615,178 - -0.1
615,219 + +0.6
615,339 - -0.5
615,354 + -0.0
615,355 + +0.7
615,358 - +1.1
615,365 + +0.0
615,367 + +0.2
615,371 + +0.6
615,379 + +1.7
615,384 + -1.6
615,389 + +2.2
615,433 - +0.6
615,515 - -0.9
615,533 + -0.2
615,533 - +0.1
615,537 - +0.2
615,541 - -1.4
615,551 - -0.3
615,552 - -0.5
615,566 - -0.6
615,675 - +1.5
615,724 - -0.4
615,751 - -0.1
615,763 + +0.9
615,816 + +1.0
615,841 - -1.5
615,853 + +0.8
615,869 - +1.3
615,935 + -0.7
615,945 + +0.6
615,949 + -1.7
615,949 + +0.5
615,955 + +0.1
615,966 - -0.4
615,990 - -0.6
616,045 + -0.1
616,064 - +2.1
616,072 - -2.3
616,079 - +0.4
616,084 + -1.1
616,092 - +0.0
616,102 - -0.6
616,103 - -0.6
616,106 - -1.4
616,113 - -0.5
616,149 - +0.5
616,153 - -0.3

Or see this region's nucleotide sequence