Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5394

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13762 and 13763 are separated by 73 nucleotides mRNA_5394: 13762 - SUPERFAMILY--SSF54897, at 121 to 1,074 13762 mRNA_5395: 13763 - KOG4551 GPI-GlcNAc transferase complex, PIG-H component, involved in glycosylphosphatidylinositol anchor biosynthesis, at 1,148 to 1,997 13763

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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1 + -0.5
1 + +0.3
1 + +2.4
1 + +0.1
23 + +0.4
29 + +0.6
29 + +0.4
34 + -1.3
39 + -2.1
39 + +0.3
47 + -1.5
50 + +1.2
50 + +0.8
50 + -0.3
50 + -0.1
50 - +0.7
51 + +0.4
61 + +1.3
62 + +0.2
96 + +0.4
116 + -0.1
158 - +0.4
159 - -0.2
160 - +0.5
169 - +0.8
180 - +1.1
189 + -0.5
198 + -0.5
201 - -1.4
208 - -0.1
210 + -1.5
225 + 13762 mRNA_5394 0.11 +0.6
225 + 13762 mRNA_5394 0.11 +0.4
244 + 13762 mRNA_5394 0.13 -0.0
245 - 13762 mRNA_5394 0.13 +1.3
271 - 13762 mRNA_5394 0.16 -0.6
276 - 13762 mRNA_5394 0.16 -2.5
277 + 13762 mRNA_5394 0.16 +1.1
280 - 13762 mRNA_5394 0.17 -0.8
306 + 13762 mRNA_5394 0.19 +0.7
317 - 13762 mRNA_5394 0.21 -1.1
345 + 13762 mRNA_5394 0.23 -1.9
345 - 13762 mRNA_5394 0.23 -3.1
347 + 13762 mRNA_5394 0.24 +0.6
359 - 13762 mRNA_5394 0.25 -0.4
387 - 13762 mRNA_5394 0.28 -0.4
399 + 13762 mRNA_5394 0.29 +0.6
434 + 13762 mRNA_5394 0.33 +0.8
447 - 13762 mRNA_5394 0.34 +0.1
485 - 13762 mRNA_5394 0.38 -2.5
543 + 13762 mRNA_5394 0.44 -1.5
649 + 13762 mRNA_5394 0.55 -0.7
667 + 13762 mRNA_5394 0.57 -3.3
667 - 13762 mRNA_5394 0.57 +0.4
678 - 13762 mRNA_5394 0.58 +0.5
718 + 13762 mRNA_5394 0.63 -1.2
723 + 13762 mRNA_5394 0.63 -1.1
802 + 13762 mRNA_5394 0.71 +0.6
806 + 13762 mRNA_5394 0.72 +1.8
905 - 13762 mRNA_5394 0.82 +0.7
911 + 13762 mRNA_5394 0.83 +0.1
965 + 13762 mRNA_5394 0.88 -0.4
966 + 13762 mRNA_5394 0.89 +0.4
968 + 13762 mRNA_5394 0.89 +0.5
1,014 - +0.2
1,084 - +1.9
1,103 - -0.2
1,110 + -0.6
1,245 - 13763 mRNA_5395 0.11 -1.3
1,260 - 13763 mRNA_5395 0.13 -0.5
1,376 - 13763 mRNA_5395 0.27 -0.4
1,438 + 13763 mRNA_5395 0.34 +0.3
1,438 + 13763 mRNA_5395 0.34 +0.4
1,438 + 13763 mRNA_5395 0.34 +0.2
1,523 + 13763 mRNA_5395 0.44 -1.3
1,528 - 13763 mRNA_5395 0.45 +0.5
1,533 + 13763 mRNA_5395 0.45 +0.0
1,538 + 13763 mRNA_5395 0.46 -2.2
1,538 - 13763 mRNA_5395 0.46 +0.8
1,556 + 13763 mRNA_5395 0.48 -1.3
1,639 + 13763 mRNA_5395 0.58 +0.1
1,854 - 13763 mRNA_5395 0.83 +0.5
1,855 - 13763 mRNA_5395 0.83 -0.8
1,887 - 13763 mRNA_5395 0.87 -1.6
1,908 - 13763 mRNA_5395 0.89 -0.1
2,000 - -0.7
2,009 + +0.9

Or see this region's nucleotide sequence