Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5411

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13778 and 13779 are separated by 545 nucleotides13779 and 13780 are separated by 175 nucleotides mRNA_5410: 13778 - KOG2952 Cell cycle control protein, at 37,061 to 38,634 13778 mRNA_5411: 13779 - K03251 EIF3D translation initiation factor 3 subunit D, at 39,180 to 41,133 13779 mRNA_5412: 13780 - ProSitePatterns-Protein kinases ATP-binding region signature.-PS00107,ProSiteProfiles-Protein kinase domain profile.-PS50011,SUPERFAMILY--SSF56112, at 41,309 to 43,272 13780

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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38,600 + -0.9
38,780 - +0.7
38,781 - +0.6
38,790 + +0.4
38,923 + -0.7
38,935 - +0.3
38,941 - +0.1
38,973 + -0.3
39,074 - +0.1
39,086 - -0.6
39,111 + -1.4
41,201 + -0.0
41,277 - -1.0
41,284 - -0.2
41,356 - +0.3
41,364 - +1.0
41,421 + +0.7
41,483 + +0.8
41,652 - 13780 mRNA_5412 0.17 +0.2
41,753 - 13780 mRNA_5412 0.23 +0.9
41,754 - 13780 mRNA_5412 0.23 +0.8
41,935 - 13780 mRNA_5412 0.32 -2.2

Or see this region's nucleotide sequence