Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5424

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13791 and 13792 are separated by 481 nucleotides13792 and 13793 are separated by 146 nucleotides mRNA_5423: 13791 - K01426 E3.5.1.4, amiE amidase, at 65,728 to 67,986 13791 mRNA_5424: 13792 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 68,468 to 70,424 13792 mRNA_5425: 13793 - K12735 PPIL4 peptidyl-prolyl cis-trans isomerase-like 4, at 70,571 to 72,264 13793

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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67,542 + 13791 mRNA_5423 0.80 -0.8
67,594 + 13791 mRNA_5423 0.83 -0.1
67,898 - -1.5
67,981 + +0.4
67,986 - -0.4
68,002 + +0.4
68,037 + -0.6
68,037 + +0.5
68,130 - +0.9
68,130 - +0.3
68,138 - -0.7
68,157 - -1.3
68,158 - -0.1
68,293 + +0.3
68,302 + +0.5
68,327 + -0.2
68,427 - -0.5
68,545 + +0.1
68,574 + -0.2
68,732 + 13792 mRNA_5424 0.13 +1.2
68,756 + 13792 mRNA_5424 0.15 +0.9
68,756 + 13792 mRNA_5424 0.15 +0.4
68,759 - 13792 mRNA_5424 0.15 -0.6
68,895 - 13792 mRNA_5424 0.22 -0.7
68,898 + 13792 mRNA_5424 0.22 +0.2
68,901 + 13792 mRNA_5424 0.22 +0.6
68,975 - 13792 mRNA_5424 0.26 +1.0
69,139 + 13792 mRNA_5424 0.34 -0.4
69,232 - 13792 mRNA_5424 0.39 -1.2
69,381 - 13792 mRNA_5424 0.47 -1.3
69,500 - 13792 mRNA_5424 0.53 -1.0
69,516 + 13792 mRNA_5424 0.54 -0.4
69,516 + 13792 mRNA_5424 0.54 -0.1
69,709 + 13792 mRNA_5424 0.63 -0.1
69,757 + 13792 mRNA_5424 0.66 +0.3
69,820 - 13792 mRNA_5424 0.69 +1.2
69,873 + 13792 mRNA_5424 0.72 -0.5
69,891 + 13792 mRNA_5424 0.73 -0.0
70,010 + 13792 mRNA_5424 0.79 +1.4
70,045 - 13792 mRNA_5424 0.81 -0.2
70,153 + 13792 mRNA_5424 0.86 +0.3
70,186 - 13792 mRNA_5424 0.88 +0.4
70,186 - 13792 mRNA_5424 0.88 +0.1
70,234 + -0.0
70,343 - +2.1
70,343 + -0.4
70,494 - -0.9
70,512 - +0.6
70,535 + +0.4
70,724 - +1.1
70,810 - 13793 mRNA_5425 0.14 +0.3
70,925 - 13793 mRNA_5425 0.21 +0.4
71,048 - 13793 mRNA_5425 0.28 +0.8

Or see this region's nucleotide sequence