Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5434

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13801 and 13802 are separated by 194 nucleotides13802 and 13803 are separated by 117 nucleotides mRNA_5433: 13801 - BLAST UPF0658 Golgi apparatus membrane protein [Termitomyce..., at 87,517 to 89,164 13801 mRNA_5434: 13802 - KOG2852 Possible oxidoreductase, at 89,359 to 90,914 13802 mRNA_5435: 13803 - Hypothetical Protein, at 91,032 to 92,817 13803

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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88,454 + 13801 mRNA_5433 0.57 +0.3
88,462 + 13801 mRNA_5433 0.57 -0.6
88,622 + 13801 mRNA_5433 0.67 -2.1
88,760 - 13801 mRNA_5433 0.75 +0.8
88,782 - 13801 mRNA_5433 0.77 -0.9
88,851 + 13801 mRNA_5433 0.81 -1.6
88,884 - 13801 mRNA_5433 0.83 +0.9
88,963 - 13801 mRNA_5433 0.88 -0.3
89,190 + -0.6
89,469 + -0.4
89,620 + 13802 mRNA_5434 0.17 +0.4
89,761 + 13802 mRNA_5434 0.26 -0.9
89,768 + 13802 mRNA_5434 0.26 +0.2
89,906 - 13802 mRNA_5434 0.35 +0.5
90,478 + 13802 mRNA_5434 0.72 -1.5
90,582 - 13802 mRNA_5434 0.79 -0.5
90,709 - 13802 mRNA_5434 0.87 +0.3
90,798 - +0.8
91,380 + 13803 mRNA_5435 0.19 +0.4
91,467 + 13803 mRNA_5435 0.24 +1.3
91,821 - 13803 mRNA_5435 0.44 +0.8

Or see this region's nucleotide sequence