Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5477

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13844 and 13845 are separated by 269 nucleotides13845 and 13846 are separated by 151 nucleotides mRNA_5476: 13844 - KOG4719 Nuclear pore complex protein, at 183,800 to 188,314 13844 mRNA_5477: 13845 - K20179 VPS11, PEP5 vacuolar protein sorting-associated protein 11, at 188,584 to 192,714 13845 mRNA_5478: 13846 - SUPERFAMILY--SSF81383, at 192,866 to 194,409 13846

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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188,366 + +1.2
188,373 + +0.1
188,390 - -0.9
188,512 - -1.4
188,521 + -0.4
188,794 - -1.1
189,613 - 13845 mRNA_5477 0.25 -1.0
190,270 - 13845 mRNA_5477 0.41 -0.0
192,339 + -0.0
192,752 - -0.4
192,792 - +1.5
192,795 - +0.8
192,796 + +0.9
192,800 + +1.8
192,816 - +1.2
192,822 + +1.4
192,823 + +0.2
192,957 - +1.6
192,962 + -0.9

Or see this region's nucleotide sequence