Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5494

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13861 and 13862 are separated by 244 nucleotides13862 and 13863 are separated by 270 nucleotides mRNA_5493: 13861 - KOG0297 TNF receptor-associated factor, at 226,930 to 227,786 13861 mRNA_5494: 13862 - KOG1119 Mitochondrial Fe-S cluster biosynthesis protein ISA2 (contains a HesB-like domain), at 228,031 to 229,041 13862 mRNA_5495: 13863 - K10733 GINS2, PSF2 GINS complex subunit 2, at 229,312 to 230,460 13863

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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227,066 + 13861 mRNA_5493 0.16 -2.0
227,196 + 13861 mRNA_5493 0.31 -0.9
227,211 + 13861 mRNA_5493 0.33 +0.3
227,232 + 13861 mRNA_5493 0.35 +1.2
227,489 - 13861 mRNA_5493 0.65 -1.4
227,536 - 13861 mRNA_5493 0.71 +0.5
229,084 + -0.1
229,096 + -0.2

Or see this region's nucleotide sequence