Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5522

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13889 and 13890 are separated by 489 nucleotides13890 and 13891 are separated by 484 nucleotides mRNA_5521: 13889 - ProSiteProfiles-Zinc finger RING-type profile.-PS50089,ProSiteProfiles-Zinc finger TRAF-type profile.-PS50145,SUPERFAMILY--SSF49599,SUPERFAMILY--SSF57850, at 291,900 to 293,030 13889 mRNA_5522: 13890 - ProSiteProfiles-Zinc finger TRAF-type profile.-PS50145, at 293,520 to 294,673 13890 mRNA_5523: 13891 - ProSiteProfiles-Zinc finger RING-type profile.-PS50089,SUPERFAMILY--SSF57850, at 295,158 to 296,227 13891

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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292,590 + 13889 mRNA_5521 0.61 +2.8
292,592 - 13889 mRNA_5521 0.61 -0.4
292,629 - 13889 mRNA_5521 0.64 +0.1
292,647 + 13889 mRNA_5521 0.66 +2.3
292,702 + 13889 mRNA_5521 0.71 -2.0
292,708 - 13889 mRNA_5521 0.71 -0.3
292,756 - 13889 mRNA_5521 0.76 +0.4
292,767 + 13889 mRNA_5521 0.77 +1.1
292,898 + 13889 mRNA_5521 0.88 -0.5
292,924 - -0.5
292,935 + -1.8
293,058 + +0.8
293,100 + -0.3
293,190 - -0.2
293,201 + +0.6
293,216 - +0.4
293,222 - +0.2
293,390 + -0.8
293,444 - -0.8
293,507 - +0.4
293,908 + 13890 mRNA_5522 0.34 +0.4
293,911 + 13890 mRNA_5522 0.34 -1.0
294,001 - 13890 mRNA_5522 0.42 -0.2
294,096 - 13890 mRNA_5522 0.50 +0.4
294,175 + 13890 mRNA_5522 0.57 +0.1
294,199 - 13890 mRNA_5522 0.59 +0.2
294,223 - 13890 mRNA_5522 0.61 +1.5
294,226 + 13890 mRNA_5522 0.61 -0.3
294,348 + 13890 mRNA_5522 0.72 -0.1
294,438 + 13890 mRNA_5522 0.80 -2.3
294,482 + 13890 mRNA_5522 0.83 -1.5
294,488 - 13890 mRNA_5522 0.84 -1.3
294,499 - 13890 mRNA_5522 0.85 +0.1
294,505 + 13890 mRNA_5522 0.85 +1.2
294,512 + 13890 mRNA_5522 0.86 +0.4
294,616 + -0.3
294,637 - +1.6
294,654 + -0.3
294,672 - -1.5
294,787 - +0.5
294,797 - -0.2
294,803 - -0.1
294,809 - +0.2
294,813 + +0.9
294,882 + -0.1
294,985 + -0.1
294,985 + +0.3
294,985 + +0.3
294,985 + +1.8
294,995 + +0.9
295,044 - +0.0
295,104 + -0.6
295,220 - +0.6
295,221 - +0.1
295,221 + -1.0
295,529 - 13891 mRNA_5523 0.35 -1.0
295,577 + 13891 mRNA_5523 0.39 -1.7
295,582 - 13891 mRNA_5523 0.40 -0.9

Or see this region's nucleotide sequence