Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5562

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13929 and 13930 are separated by 200 nucleotides13930 and 13931 are separated by 384 nucleotides mRNA_5561: 13929 - Hypothetical Protein, at 382,634 to 383,572 13929 mRNA_5562: 13930 - KOG0257 Kynurenine aminotransferase, glutamine transaminase K, at 383,773 to 385,239 13930 mRNA_5563: 13931 - K10756 RFC3_5 replication factor C subunit 3/5, at 385,624 to 387,371 13931

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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382,902 - 13929 mRNA_5561 0.29 -1.9
383,142 - 13929 mRNA_5561 0.54 +0.1
383,376 + 13929 mRNA_5561 0.79 +0.2
383,408 - 13929 mRNA_5561 0.82 +0.4
383,538 + +0.7
383,568 - +0.3
383,579 + -0.1
383,626 - -0.6
383,642 - +0.4
383,694 + -0.5
383,993 + 13930 mRNA_5562 0.15 -0.6
384,002 - 13930 mRNA_5562 0.16 -0.4
384,252 + 13930 mRNA_5562 0.33 +0.1
384,405 + 13930 mRNA_5562 0.43 +0.5
384,552 + 13930 mRNA_5562 0.53 +1.1
384,555 - 13930 mRNA_5562 0.53 +0.8
384,821 + 13930 mRNA_5562 0.71 +2.5
384,822 - 13930 mRNA_5562 0.72 +0.2
384,857 + 13930 mRNA_5562 0.74 -1.0
384,862 + 13930 mRNA_5562 0.74 -0.9
384,866 + 13930 mRNA_5562 0.75 -0.4
385,009 - 13930 mRNA_5562 0.84 -1.0
385,020 + 13930 mRNA_5562 0.85 -0.5
385,124 - -0.9
385,154 + -0.4
385,164 - +0.2
385,278 - +0.5
385,298 + -0.6
385,304 - +0.7
385,304 + -0.8
385,314 + -1.2
385,464 - -0.7
385,470 - +0.7

Or see this region's nucleotide sequence